RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C UBP16Q02863 499 aa7.97□□□□□ -1.13
TDP1YBR223C ESC2Q06340 456 aa7.97□□□□□ -1.13
TDP1YBR223C ELG1Q12050 791 aa7.97□□□□□ -1.13
TDP1YBR223C TAF13P11747 167 aa7.96□□□□□ -1.13
TDP1YBR223C FRS2P15625 503 aaKnown RBP7.96□□□□□ -1.13
TDP1YBR223C OPI1P21957 404 aa7.96□□□□□ -1.13
TDP1YBR223C MRPL10P36520 322 aa7.96□□□□□ -1.13
TDP1YBR223C YHL017WP38745 532 aa7.96□□□□□ -1.13
TDP1YBR223C YKE2P52553 114 aa7.96□□□□□ -1.13
TDP1YBR223C YNL193WP53870 558 aa7.96□□□□□ -1.13
TDP1YBR223C ESF1Q06344 628 aaKnown RBP7.96□□□□□ -1.13
TDP1YBR223C LAM6Q08001 693 aa7.96□□□□□ -1.13
TDP1YBR223C RRI2Q12348 645 aa7.96□□□□□ -1.13
TDP1YBR223C SAC3P46674 1301 aa7.96□□□□□ -1.14
TDP1YBR223C SIS2P36024 562 aa7.96□□□□□ -1.14
TDP1YBR223C YKR075CP36155 307 aa7.96□□□□□ -1.14
TDP1YBR223C MBR1P23493 339 aa7.95□□□□□ -1.14
TDP1YBR223C RDS1P25611 832 aa7.95□□□□□ -1.14
TDP1YBR223C YPL150WQ12152 901 aa7.95□□□□□ -1.14
TDP1YBR223C TRS33Q99394 268 aa7.95□□□□□ -1.14
TDP1YBR223C PEP3P27801 918 aa7.94□□□□□ -1.14
TDP1YBR223C IMP2'P32351 346 aa7.94□□□□□ -1.14
TDP1YBR223C NPR3P38742 1146 aa7.94□□□□□ -1.14
TDP1YBR223C YMR147WP40218 223 aaKnown RBP7.94□□□□□ -1.14
TDP1YBR223C BUD6P41697 788 aa7.94□□□□□ -1.14
TDP1YBR223C UTP10P42945 1769 aaKnown RBP7.94□□□□□ -1.14
TDP1YBR223C MATALPHA2P0CY08 210 aa7.93□□□□□ -1.14
TDP1YBR223C HMLALPHA2P0CY09 210 aa7.93□□□□□ -1.14
TDP1YBR223C FBP26P32604 452 aa7.93□□□□□ -1.14
TDP1YBR223C ENP2P48234 707 aaKnown RBP7.93□□□□□ -1.14
TDP1YBR223C SGD1Q06132 899 aa7.93□□□□□ -1.14
TDP1YBR223C NOP58Q12499 511 aaKnown RBP7.93□□□□□ -1.14
TDP1YBR223C PRP40P33203 583 aaKnown RBP7.92□□□□□ -1.14
TDP1YBR223C MAL33P38157 468 aa7.92□□□□□ -1.14
TDP1YBR223C RFC5P38251 354 aa7.92□□□□□ -1.14
TDP1YBR223C HAT1Q12341 374 aa7.92□□□□□ -1.14
TDP1YBR223C DDP1Q99321 188 aaKnown RBP7.92□□□□□ -1.14
TDP1YBR223C ADR1P07248 1323 aa7.92□□□□□ -1.14
TDP1YBR223C SES1P07284 462 aaKnown RBP7.92□□□□□ -1.14
TDP1YBR223C CYC8P14922 966 aa7.92□□□□□ -1.14
TDP1YBR223C BBC1P47068 1157 aa7.92□□□□□ -1.14
TDP1YBR223C SSL2Q00578 843 aa7.92□□□□□ -1.14
TDP1YBR223C NYV1Q12255 253 aa7.92□□□□□ -1.14
TDP1YBR223C MSB4Q12317 492 aa7.92□□□□□ -1.14
TDP1YBR223C PIF1P07271 859 aa7.91□□□□□ -1.14
TDP1YBR223C SKI2P35207 1287 aaKnown RBP RIP-Chip data7.91□□□□□ -1.14not detected
TDP1YBR223C MPE1P35728 441 aaKnown RBP7.91□□□□□ -1.14
TDP1YBR223C YJL181WP46987 611 aa7.91□□□□□ -1.14
TDP1YBR223C GRE2Q12068 342 aaKnown RBP7.91□□□□□ -1.14
TDP1YBR223C SSF2Q12153 453 aaPredicted RBP7.91□□□□□ -1.14
TDP1YBR223C LAM4P38800 1345 aa7.9□□□□□ -1.14
TDP1YBR223C ATE1P16639 503 aa7.9□□□□□ -1.14
TDP1YBR223C MET1P36150 593 aa7.9□□□□□ -1.14
TDP1YBR223C LEO1P38439 464 aa7.9□□□□□ -1.14
TDP1YBR223C TIM50Q02776 476 aa7.9□□□□□ -1.14
TDP1YBR223C PKH3Q03306 898 aaPredicted RBP7.9□□□□□ -1.14
TDP1YBR223C TAH18Q12181 623 aa7.9□□□□□ -1.14
TDP1YBR223C POM152P39685 1337 aa7.9□□□□□ -1.15
TDP1YBR223C YER130CP39959 443 aa7.89□□□□□ -1.15
TDP1YBR223C TPM2P40414 161 aa7.89□□□□□ -1.15
TDP1YBR223C VMS1Q04311 632 aaKnown RBP7.89□□□□□ -1.15
TDP1YBR223C GPA1P08539 472 aa7.89□□□□□ -1.15
TDP1YBR223C NGR1P32831 672 aaKnown RBP7.89□□□□□ -1.15
TDP1YBR223C RRM3P38766 723 aa7.89□□□□□ -1.15
TDP1YBR223C EPL1P43572 832 aa7.89□□□□□ -1.15
TDP1YBR223C UBP10P53874 792 aaPredicted RBP7.89□□□□□ -1.15
TDP1YBR223C SRC1Q03707 834 aa7.89□□□□□ -1.15
TDP1YBR223C YLR407WQ06070 228 aa7.89□□□□□ -1.15
TDP1YBR223C MFT1P33441 392 aaKnown RBP7.88□□□□□ -1.15
TDP1YBR223C HAL5P38970 855 aaKnown RBP7.88□□□□□ -1.15
TDP1YBR223C STU2P46675 888 aa7.88□□□□□ -1.15
TDP1YBR223C SPN1Q06505 410 aaPredicted RBP7.88□□□□□ -1.15
TDP1YBR223C ISW2Q08773 1120 aa7.88□□□□□ -1.15
TDP1YBR223C HSP82P02829 709 aaKnown RBP7.87□□□□□ -1.15
TDP1YBR223C PGI1P12709 554 aaKnown RBP7.87□□□□□ -1.15
TDP1YBR223C CRG1P38892 291 aaRIP-Chip data7.87□□□□□ -1.15not detected
TDP1YBR223C RRP8P38961 392 aaKnown RBP7.87□□□□□ -1.15
TDP1YBR223C IRC8P47046 822 aa7.87□□□□□ -1.15
TDP1YBR223C YPT11P48559 417 aa7.87□□□□□ -1.15
TDP1YBR223C ECM23Q02710 187 aa7.87□□□□□ -1.15
TDP1YBR223C EST2Q06163 884 aa7.87□□□□□ -1.15
TDP1YBR223C PFK2P16862 959 aaKnown RBP RIP-Chip data7.86□□□□□ -1.15not detected
TDP1YBR223C DIT2P21595 489 aa7.86□□□□□ -1.15
TDP1YBR223C RPN11P43588 306 aaKnown RBP7.86□□□□□ -1.15
TDP1YBR223C ALD3P54114 506 aa7.86□□□□□ -1.15
TDP1YBR223C RAT1Q02792 1006 aaKnown RBP7.86□□□□□ -1.15
TDP1YBR223C KAR5Q04746 504 aa7.86□□□□□ -1.15
TDP1YBR223C THI3Q07471 609 aa7.86□□□□□ -1.15
TDP1YBR223C MPH3P0CE00 602 aa7.85□□□□□ -1.15
TDP1YBR223C RGP1P16664 663 aa7.85□□□□□ -1.15
TDP1YBR223C RER2P35196 286 aa7.85□□□□□ -1.15
TDP1YBR223C YKT6P36015 200 aaKnown RBP7.85□□□□□ -1.15
TDP1YBR223C RFT1P38206 574 aaPredicted RBP7.85□□□□□ -1.15
TDP1YBR223C YFR006WP43590 535 aa7.85□□□□□ -1.15
TDP1YBR223C HOS3Q02959 697 aaKnown RBP7.85□□□□□ -1.15
TDP1YBR223C HCA4P20448 770 aaKnown RBP7.85□□□□□ -1.15
TDP1YBR223C MNR2P35724 969 aa7.85□□□□□ -1.15
TDP1YBR223C GLO3P38682 493 aaKnown RBP7.85□□□□□ -1.15
TDP1YBR223C NOC2P39744 710 aaKnown RBP7.85□□□□□ -1.15
TDP1YBR223C PPM2Q08282 695 aa7.85□□□□□ -1.15
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms