RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 MYL3P08590 195 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 PABPC1P11940 636 aaKnown RBP12.08□□□□□ -0.48
VPS13A-205ENST00000376636 VCLP18206 1134 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 PSMD4P55036 377 aaKnown RBP12.08□□□□□ -0.48
VPS13A-205ENST00000376636 COASYQ13057 564 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 SCUBE1Q8IWY4 988 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 MSH3P20585 1137 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 ATP6V1B2P21281 511 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 ADORA2BP29275 332 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 TRIM32Q13049 653 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 MFSD4BQ5TF39 518 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 COMMD2Q86X83 199 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 GPD1LQ8N335 351 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 E2F7Q96AV8 911 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 GPR108Q9NPR9 543 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 KLHL1Q9NR64 748 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 NCAPD2Q15021 1401 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 SYNMO15061 1565 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 MAP3K19Q56UN5 1328 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 STK36Q9NRP7 1315 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 ACADLP28330 430 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 PPIDQ08752 370 aaKnown RBP12.08□□□□□ -0.48
VPS13A-205ENST00000376636 TTLL4Q14679 1199 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 ZCCHC7Q8N3Z6 543 aaKnown RBP12.08□□□□□ -0.48
VPS13A-205ENST00000376636 A0A0B4J269 797 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 TARSP26639 723 aaKnown RBP12.08□□□□□ -0.48
VPS13A-205ENST00000376636 CDC42EP1Q00587 391 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 OTUD4Q01804 1114 aaKnown RBP12.08□□□□□ -0.48
VPS13A-205ENST00000376636 TUBB3Q13509 450 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 PADI6Q6TGC4 694 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 NT5DC4Q86YG4 428 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 SPATA18Q8TC71 538 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 ZNF483Q8TF39 744 aaPredicted RBP12.08□□□□□ -0.48
VPS13A-205ENST00000376636 CFAP74Q9C0B2 1584 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 FAM192AQ9GZU8 254 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 GGT7Q9UJ14 662 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 PCDHGA4Q9Y5G9 962 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 TRIM49BA6NDI0 452 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 TRIM49D1C9J1S8 452 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 LCA5LO95447 670 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 THRAP10827 490 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 CPB1P15086 417 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 SETD9Q8NE22 299 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 COMMD8Q9NX08 183 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 WWOXQ9NZC7 414 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 MYO5CQ9NQX4 1742 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 ATP1A3P13637 1013 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 TMEM79Q9BSE2 394 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 ZCWPW1Q9H0M4 648 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 POLG2Q9UHN1 485 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 EFCAB10A6NFE3 127 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 STARP49675 285 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 TRIM48Q8IWZ4 208 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 EID3Q8N140 333 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 A2MP01023 1474 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 PHF20L1A8MW92 1017 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 MOCS2O96007 188 aaPredicted RBP12.08□□□□□ -0.48
VPS13A-205ENST00000376636 TRAF3Q13114 568 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 ARHGAP22Q7Z5H3 698 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 LRRC71Q8N4P6 559 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 SLC40A1Q9NP59 571 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 PCDHB6Q9Y5E3 794 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 SNX13Q9Y5W8 968 aa12.08□□□□□ -0.48
VPS13A-205ENST00000376636 ERBB4Q15303 1308 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 NDUFB5O43674 189 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 SNUPNO95149 360 aaKnown RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 TGM3Q08188 693 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 NFX1Q12986 1120 aaKnown RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 CHI3L2Q15782 390 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 FAM20AQ96MK3 541 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 ZNF302Q9NR11 478 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 RAD54BQ9Y620 910 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 C1orf232A0A0U1RR37 186 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 CCDC182A6NF36 153 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 HAVCR1Q96D42 359 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 SLC9A7Q96T83 725 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 SNX12Q9UMY4 172 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 PLB1Q6P1J6 1458 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 CHP2O43745 196 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 PCCAP05165 728 aaPredicted RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 LCP1P13796 627 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 IFNGR2P38484 337 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 CRKP46108 304 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 SPATA2LQ8IUW3 424 aaPredicted RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 UBE2QL1A1L167 161 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 RORBQ92753 470 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 STARD13Q9Y3M8 1113 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 CNPP09543 421 aaKnown RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 FAM58BPP0C7Q3 252 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 TRMT5Q32P41 509 aaKnown RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 CCDC144BQ3MJ40 725 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 BNC2Q6ZN30 1099 aaPredicted RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 KDELC2Q7Z4H8 507 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 CCDC185Q8N715 623 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 ATG16L2Q8NAA4 619 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 GPR101Q96P66 508 aaPredicted RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 ABCC2Q92887 1545 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 TIPINQ9BVW5 301 aa12.07□□□□□ -0.48
VPS13A-205ENST00000376636 COPS7BQ9H9Q2 264 aaPredicted RBP12.07□□□□□ -0.48
VPS13A-205ENST00000376636 NCKAP5LQ9HCH0 1330 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms