RNA–Protein interactions for RNA: YFL001W

DEG1, Transcript of tRNA:pseudouridine synthase, yeastyeast

Gene DEG1, Length 1,329 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEG1YFL001W YDR034W-BQ6Q5X2 51 aa3.24□□□□□ -1.89
DEG1YFL001W Q0144Q9ZZW2 109 aa3.24□□□□□ -1.89
DEG1YFL001W CMD1P06787 147 aaKnown RBP3.23□□□□□ -1.89
DEG1YFL001W MRPS28P21771 286 aa3.23□□□□□ -1.89
DEG1YFL001W OCH1P31755 480 aa3.23□□□□□ -1.89
DEG1YFL001W RGI1P40043 161 aaPredicted RBP3.23□□□□□ -1.89
DEG1YFL001W PGA1P53896 198 aa3.23□□□□□ -1.89
DEG1YFL001W CWC27Q02770 301 aa3.23□□□□□ -1.89
DEG1YFL001W SHH4Q06236 168 aa3.23□□□□□ -1.89
DEG1YFL001W LDB18Q07887 179 aa3.23□□□□□ -1.89
DEG1YFL001W DGA1Q08650 418 aa3.23□□□□□ -1.89
DEG1YFL001W FYV7Q12247 151 aa3.23□□□□□ -1.89
DEG1YFL001W MHT1Q12525 324 aa3.23□□□□□ -1.89
DEG1YFL001W GPA2P10823 449 aa3.22□□□□□ -1.89
DEG1YFL001W SEC14P24280 304 aaKnown RBP3.22□□□□□ -1.89
DEG1YFL001W UPS2P35200 230 aa3.22□□□□□ -1.89
DEG1YFL001W DER1P38307 211 aa3.22□□□□□ -1.89
DEG1YFL001W FCY21P40039 528 aa3.22□□□□□ -1.89
DEG1YFL001W YGR201CP42936 225 aa3.22□□□□□ -1.89
DEG1YFL001W MOG1P47123 218 aa3.22□□□□□ -1.89
DEG1YFL001W NQM1P53228 333 aaPredicted RBP3.22□□□□□ -1.89
DEG1YFL001W COS6P53344 381 aa3.22□□□□□ -1.89
DEG1YFL001W SLM2P53955 656 aa3.22□□□□□ -1.89
DEG1YFL001W DYN2Q02647 92 aa3.22□□□□□ -1.89
DEG1YFL001W RFU1Q08003 200 aa3.22□□□□□ -1.89
DEG1YFL001W RTR2Q12378 196 aa3.22□□□□□ -1.89
DEG1YFL001W MPD1Q12404 318 aaKnown RBP3.22□□□□□ -1.89
DEG1YFL001W PEX11Q12462 236 aa3.22□□□□□ -1.89
DEG1YFL001W YPR096CO13587 100 aa3.21□□□□□ -1.89
DEG1YFL001W RPS28BP0C0X0 67 aaKnown RBP3.21□□□□□ -1.89
DEG1YFL001W BUD23P25627 275 aaPredicted RBP3.21□□□□□ -1.89
DEG1YFL001W YBL010CP32788 280 aa3.21□□□□□ -1.89
DEG1YFL001W AIM2P39721 246 aa3.21□□□□□ -1.89
DEG1YFL001W PGD1P40356 397 aa3.21□□□□□ -1.89
DEG1YFL001W GVP36P40531 326 aaKnown RBP3.21□□□□□ -1.89
DEG1YFL001W YGL235WP53071 178 aa3.21□□□□□ -1.89
DEG1YFL001W ARL3Q02804 198 aa3.21□□□□□ -1.89
DEG1YFL001W GPI17Q04080 534 aa3.21□□□□□ -1.89
DEG1YFL001W RDS3Q06835 107 aaPredicted RBP3.21□□□□□ -1.89
DEG1YFL001W VPS68Q12016 184 aa3.21□□□□□ -1.89
DEG1YFL001W NSL1Q12143 216 aa3.21□□□□□ -1.89
DEG1YFL001W YLR046CQ12253 270 aa3.21□□□□□ -1.89
DEG1YFL001W WIP1Q2V2P8 89 aa3.21□□□□□ -1.89
DEG1YFL001W RPS28AQ3E7X9 67 aaPredicted RBP3.21□□□□□ -1.89
DEG1YFL001W PET54P10834 293 aa3.2□□□□□ -1.9
DEG1YFL001W FPR1P20081 114 aaKnown RBP3.2□□□□□ -1.9
DEG1YFL001W IDP1P21954 428 aaKnown RBP3.2□□□□□ -1.9
DEG1YFL001W CLB6P32943 380 aa3.2□□□□□ -1.9
DEG1YFL001W RPS1AP33442 255 aaKnown RBP3.2□□□□□ -1.9
DEG1YFL001W YKL102CP34249 101 aa3.2□□□□□ -1.9
DEG1YFL001W UMP1P38293 148 aa3.2□□□□□ -1.9
DEG1YFL001W SMX2P40204 77 aaKnown RBP3.2□□□□□ -1.9
DEG1YFL001W HPM1P40481 377 aa3.2□□□□□ -1.9
DEG1YFL001W SER2P42941 309 aa3.2□□□□□ -1.9
DEG1YFL001W TDA4P47153 279 aa3.2□□□□□ -1.9
DEG1YFL001W ORM1P53224 222 aa3.2□□□□□ -1.9
DEG1YFL001W TIM13P53299 105 aa3.2□□□□□ -1.9
DEG1YFL001W YPR114WQ06107 315 aa3.2□□□□□ -1.9
DEG1YFL001W OCA6Q12454 224 aa3.2□□□□□ -1.9
DEG1YFL001W YKL068W-AQ3E826 78 aa3.2□□□□□ -1.9
DEG1YFL001W YPR014CQ6B0W2 109 aa3.2□□□□□ -1.9
DEG1YFL001W YCR101CP25607 182 aa3.19□□□□□ -1.9
DEG1YFL001W TFC1P32367 649 aa3.19□□□□□ -1.9
DEG1YFL001W YEA4P40004 342 aa3.19□□□□□ -1.9
DEG1YFL001W YGR219WP53307 113 aa3.19□□□□□ -1.9
DEG1YFL001W PIR1Q03178 341 aa3.19□□□□□ -1.9
DEG1YFL001W RDI1Q12434 202 aa3.19□□□□□ -1.9
DEG1YFL001W YCL001W-BQ96VH2 84 aa3.19□□□□□ -1.9
DEG1YFL001W MDH3P32419 343 aaKnown RBP RIP-Chip data3.19□□□□□ -1.9not detected
DEG1YFL001W GSP1P32835 219 aaKnown RBP3.19□□□□□ -1.9
DEG1YFL001W GSP2P32836 220 aaKnown RBP3.19□□□□□ -1.9
DEG1YFL001W ETR1P38071 380 aa3.19□□□□□ -1.9
DEG1YFL001W DOC1P53068 250 aa3.19□□□□□ -1.9
DEG1YFL001W YGR017WP53210 297 aa3.19□□□□□ -1.9
DEG1YFL001W YDR274CP87283 123 aa3.19□□□□□ -1.9
DEG1YFL001W TMA20P89886 181 aaPredicted RBP3.19□□□□□ -1.9
DEG1YFL001W MAK3Q03503 176 aa3.19□□□□□ -1.9
DEG1YFL001W RUB1Q03919 77 aa3.19□□□□□ -1.9
DEG1YFL001W PLP1Q04004 230 aa3.19□□□□□ -1.9
DEG1YFL001W FRQ1Q06389 190 aa3.19□□□□□ -1.9
DEG1YFL001W YOR214CQ12282 236 aa3.19□□□□□ -1.9
DEG1YFL001W ATO3Q12359 275 aa3.19□□□□□ -1.9
DEG1YFL001W ODC2Q99297 307 aa3.19□□□□□ -1.9
DEG1YFL001W NSP1P14907 823 aaKnown RBP3.18□□□□□ -1.9
DEG1YFL001W SUA7P29055 345 aaPredicted RBP3.18□□□□□ -1.9
DEG1YFL001W SUI1P32911 108 aaKnown RBP3.18□□□□□ -1.9
DEG1YFL001W SNC2P33328 115 aa3.18□□□□□ -1.9
DEG1YFL001W HSK3P69852 69 aa3.18□□□□□ -1.9
DEG1YFL001W NHP10Q03435 203 aa3.18□□□□□ -1.9
DEG1YFL001W SDH7Q04401 133 aa3.18□□□□□ -1.9
DEG1YFL001W HRT1Q08273 121 aa3.18□□□□□ -1.9
DEG1YFL001W SLO1Q3E784 85 aa3.18□□□□□ -1.9
DEG1YFL001W YBR285WP38354 144 aa3.17□□□□□ -1.9
DEG1YFL001W YER134CP40081 178 aa3.17□□□□□ -1.9
DEG1YFL001W PEP8P40335 379 aa3.17□□□□□ -1.9
DEG1YFL001W EMC4P53073 190 aa3.17□□□□□ -1.9
DEG1YFL001W YNR062CP53748 327 aa3.17□□□□□ -1.9
DEG1YFL001W SAE3P89114 91 aa3.17□□□□□ -1.9
DEG1YFL001W CSN9Q03981 162 aa3.17□□□□□ -1.9
DEG1YFL001W YOL014WQ08110 124 aa3.17□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 28.3 ms