Protein–RNA interactions for Protein: Q08003

RFU1, Regulator of free ubiquitin chains 1, yeastyeast

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RFU1Q08003 YML009W-BYML009W-B 477 nt17.54■□□□□ 0.4
RFU1Q08003 NSR1YGR159C 1245 nt17.53■□□□□ 0.4
RFU1Q08003 NOP1YDL014W 984 nt17.03■□□□□ 0.32
RFU1Q08003 MDJ1YFL016C 1536 nt15.67■□□□□ 0.1
RFU1Q08003 YKL036CYKL036C 393 nt15.56■□□□□ 0.08
RFU1Q08003 SRX1YKL086W 384 nt14.83□□□□□ -0.04
RFU1Q08003 Q0297Q0297 156 nt14.81□□□□□ -0.04
RFU1Q08003 YJL027CYJL027C 417 nt14.5□□□□□ -0.09
RFU1Q08003 YCR051WYCR051W 669 nt14.07□□□□□ -0.16
RFU1Q08003 SCS3YGL126W 1143 nt14.05□□□□□ -0.16
RFU1Q08003 DBP2YNL112W 1641 nt13.75□□□□□ -0.21
RFU1Q08003 TRN1tP(UGG)A 72 nt13.48□□□□□ -0.25
RFU1Q08003 SUF9tP(UGG)F 72 nt13.48□□□□□ -0.25
RFU1Q08003 SUF8tP(UGG)H 72 nt13.48□□□□□ -0.25
RFU1Q08003 tP(UGG)LtP(UGG)L 72 nt13.48□□□□□ -0.25
RFU1Q08003 SUF7tP(UGG)M 72 nt13.48□□□□□ -0.25
RFU1Q08003 tP(UGG)N1tP(UGG)N1 72 nt13.48□□□□□ -0.25
RFU1Q08003 tP(UGG)N2tP(UGG)N2 72 nt13.48□□□□□ -0.25
RFU1Q08003 tP(UGG)O1tP(UGG)O1 72 nt13.48□□□□□ -0.25
RFU1Q08003 SUF11tP(UGG)O2 72 nt13.48□□□□□ -0.25
RFU1Q08003 YOL085CYOL085C 342 nt13.44□□□□□ -0.26
RFU1Q08003 YBR190WYBR190W 312 nt13.42□□□□□ -0.26
RFU1Q08003 CCC1YLR220W 969 nt13.34□□□□□ -0.27
RFU1Q08003 RPP1BYDL130W 321 nt13.3□□□□□ -0.28
RFU1Q08003 PKP1YIL042C 1185 nt13.24□□□□□ -0.29
RFU1Q08003 SSA3YBL075C 1950 nt13.16□□□□□ -0.3
RFU1Q08003 RTC3YHR087W 336 nt13.14□□□□□ -0.31
RFU1Q08003 RVS167YDR388W 1449 nt13.03□□□□□ -0.32
RFU1Q08003 SCJ1YMR214W 1134 nt12.84□□□□□ -0.35
RFU1Q08003 PET122YER153C 765 nt12.7□□□□□ -0.38
RFU1Q08003 tP(UGG)O3tP(UGG)O3 72 nt12.7□□□□□ -0.38
RFU1Q08003 SCR1SCR1 522 nt12.59□□□□□ -0.39
RFU1Q08003 ATS1YAL020C 1002 nt12.52□□□□□ -0.41
RFU1Q08003 SHR5YOL110W 714 nt12.51□□□□□ -0.41
RFU1Q08003 YDJ1YNL064C 1230 nt12.32□□□□□ -0.44
RFU1Q08003 RRN5YLR141W 1092 nt12.31□□□□□ -0.44
RFU1Q08003 PUT4YOR348C 1884 nt12.23□□□□□ -0.45
RFU1Q08003 URN1YPR152C 1398 nt12.22□□□□□ -0.45
RFU1Q08003 DEP1YAL013W 1218 nt12.16□□□□□ -0.46
RFU1Q08003 RPN10YHR200W 807 nt12.1□□□□□ -0.47
RFU1Q08003 YER088W-BYER088W-B 147 nt12.07□□□□□ -0.48
RFU1Q08003 OPI9YLR338W 858 nt12.07□□□□□ -0.48
RFU1Q08003 RSB1YOR049C 1065 nt12.06□□□□□ -0.48
RFU1Q08003 GAR1YHR089C 618 nt12.04□□□□□ -0.48
RFU1Q08003 SAH1YER043C 1350 nt12.01□□□□□ -0.49
RFU1Q08003 YNL208WYNL208W 600 nt12□□□□□ -0.49
RFU1Q08003 ARE1YCR048W 1833 nt11.96□□□□□ -0.49
RFU1Q08003 YHR049C-AYHR049C-A 297 nt11.87□□□□□ -0.51
RFU1Q08003 POA1YBR022W 534 nt11.85□□□□□ -0.51
RFU1Q08003 PUN1YLR414C 792 nt11.76□□□□□ -0.53
RFU1Q08003 YJR018WYJR018W 363 nt11.66□□□□□ -0.54
RFU1Q08003 TIR1YER011W 765 nt11.65□□□□□ -0.54
RFU1Q08003 BSC6YOL137W 1494 nt11.64□□□□□ -0.55
RFU1Q08003 PST2YDR032C 597 nt11.6□□□□□ -0.55
RFU1Q08003 PTC2YER089C 1395 nt11.59□□□□□ -0.55
RFU1Q08003 BUD23YCR047C 828 nt11.59□□□□□ -0.55
RFU1Q08003 SSA1YAL005C 1929 nt11.49□□□□□ -0.57
RFU1Q08003 NAB2YGL122C 1578 nt11.48□□□□□ -0.57
RFU1Q08003 RPP2BYDR382W 333 nt11.44□□□□□ -0.58
RFU1Q08003 YJR120WYJR120W 351 nt11.39□□□□□ -0.59
RFU1Q08003 DAL1YIR027C 1383 nt11.31□□□□□ -0.6
RFU1Q08003 FPR4YLR449W 1179 nt11.29□□□□□ -0.6
RFU1Q08003 INM2YDR287W 879 nt11.28□□□□□ -0.6
RFU1Q08003 FIS1YIL065C 468 nt11.28□□□□□ -0.6
RFU1Q08003 PAC11YDR488C 1602 nt11.27□□□□□ -0.61
RFU1Q08003 NVJ2YPR091C 2313 nt11.25□□□□□ -0.61
RFU1Q08003 SRB2YHR041C 633 nt11.22□□□□□ -0.61
RFU1Q08003 PHO4YFR034C 939 nt11.2□□□□□ -0.62
RFU1Q08003 SHU1YHL006C 453 nt11.16□□□□□ -0.62
RFU1Q08003 FPS1YLL043W 2010 nt11.16□□□□□ -0.62
RFU1Q08003 YBL100CYBL100C 315 nt11.15□□□□□ -0.62
RFU1Q08003 BDH2YAL061W 1254 nt11.14□□□□□ -0.63
RFU1Q08003 YKL097CYKL097C 411 nt11.13□□□□□ -0.63
RFU1Q08003 WWM1YFL010C 636 nt11.09□□□□□ -0.63
RFU1Q08003 YGR021WYGR021W 873 nt11.06□□□□□ -0.64
RFU1Q08003 SPT5YML010W 3192 nt11.04□□□□□ -0.64
RFU1Q08003 YAL037C-BYAL037C-B 975 nt11.01□□□□□ -0.65
RFU1Q08003 FUN26YAL022C 1554 nt10.99□□□□□ -0.65
RFU1Q08003 YPS1YLR120C 1710 nt10.99□□□□□ -0.65
RFU1Q08003 SSA4YER103W 1929 nt10.99□□□□□ -0.65
RFU1Q08003 LSM3YLR438C-A 270 nt10.98□□□□□ -0.65
RFU1Q08003 YFL021C-AYFL021C-A 855 nt10.97□□□□□ -0.65
RFU1Q08003 TRM9YML014W 840 nt10.97□□□□□ -0.65
RFU1Q08003 HOM6YJR139C 1080 nt10.95□□□□□ -0.66
RFU1Q08003 YDR095CYDR095C 411 nt10.93□□□□□ -0.66
RFU1Q08003 YHR165W-AYHR165W-A 312 nt10.93□□□□□ -0.66
RFU1Q08003 MEP2YNL142W 1500 nt10.93□□□□□ -0.66
RFU1Q08003 ALF1YNL148C 765 nt10.92□□□□□ -0.66
RFU1Q08003 MNP1YGL068W 585 nt10.87□□□□□ -0.67
RFU1Q08003 CCT6YDR188W 1641 nt10.84□□□□□ -0.67
RFU1Q08003 SUF2tP(AGG)C 72 nt10.82□□□□□ -0.68
RFU1Q08003 SUF10tP(AGG)N 72 nt10.82□□□□□ -0.68
RFU1Q08003 RKM5YLR137W 1104 nt10.8□□□□□ -0.68
RFU1Q08003 BDF1YLR399C 2061 nt10.75□□□□□ -0.69
RFU1Q08003 RPP2AYOL039W 321 nt10.73□□□□□ -0.69
RFU1Q08003 DCW1YKL046C 1350 nt10.72□□□□□ -0.69
RFU1Q08003 YOL037CYOL037C 354 nt10.7□□□□□ -0.7
RFU1Q08003 SIS1YNL007C 1059 nt10.68□□□□□ -0.7
RFU1Q08003 NPL3YDR432W 1245 nt10.67□□□□□ -0.7
RFU1Q08003 YOR139CYOR139C 393 nt10.64□□□□□ -0.71
Retrieved 100 of 7,029 protein–RNA pairs in 13.4 ms