RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C YOL162WP0CF19 215 aa2.17□□□□□ -2.06
DNL4YOR005C UBI4P0CG63 381 aaKnown RBP2.17□□□□□ -2.06
DNL4YOR005C MSI1P13712 422 aa2.17□□□□□ -2.06
DNL4YOR005C SEC22P22214 214 aa2.17□□□□□ -2.06
DNL4YOR005C RFA3P26755 122 aaKnown RBP2.17□□□□□ -2.06
DNL4YOR005C SSS1P35179 80 aa2.17□□□□□ -2.06
DNL4YOR005C YKL075CP36083 450 aa2.17□□□□□ -2.06
DNL4YOR005C YHR127WP38833 243 aaKnown RBP2.17□□□□□ -2.06
DNL4YOR005C PTH1P38876 190 aaKnown RBP2.17□□□□□ -2.06
DNL4YOR005C HEM14P40012 539 aa2.17□□□□□ -2.06
DNL4YOR005C YJR085CP47131 105 aaKnown RBP2.17□□□□□ -2.06
DNL4YOR005C YJR141WP47172 347 aaPredicted RBP2.17□□□□□ -2.06
DNL4YOR005C MIC26P50087 233 aa2.17□□□□□ -2.06
DNL4YOR005C COG7P53195 279 aa2.17□□□□□ -2.06
DNL4YOR005C RSM27P53305 110 aa2.17□□□□□ -2.06
DNL4YOR005C PGA1P53896 198 aa2.17□□□□□ -2.06
DNL4YOR005C APJ1P53940 528 aa2.17□□□□□ -2.06
DNL4YOR005C RSM10Q03201 203 aa2.17□□□□□ -2.06
DNL4YOR005C GMC1Q04399 608 aa2.17□□□□□ -2.06
DNL4YOR005C LOA1Q06508 300 aa2.17□□□□□ -2.06
DNL4YOR005C ADH3P07246 375 aaKnown RBP2.16□□□□□ -2.06
DNL4YOR005C CBP6P07253 162 aaPredicted RBP2.16□□□□□ -2.06
DNL4YOR005C RPB5P20434 215 aa2.16□□□□□ -2.06
DNL4YOR005C CPR4P25334 318 aa2.16□□□□□ -2.06
DNL4YOR005C TRX3P25372 127 aa2.16□□□□□ -2.06
DNL4YOR005C SCM4P32564 187 aa2.16□□□□□ -2.06
DNL4YOR005C CLB6P32943 380 aa2.16□□□□□ -2.06
DNL4YOR005C CUE1P38428 203 aa2.16□□□□□ -2.06
DNL4YOR005C GGC1P38988 300 aa2.16□□□□□ -2.06
DNL4YOR005C YEL073CP39974 107 aa2.16□□□□□ -2.06
DNL4YOR005C SPC25P40014 221 aa2.16□□□□□ -2.06
DNL4YOR005C RPL13BP40212 199 aaKnown RBP2.16□□□□□ -2.06
DNL4YOR005C SYS1P41544 203 aa2.16□□□□□ -2.06
DNL4YOR005C NIF3P53081 288 aa2.16□□□□□ -2.06
DNL4YOR005C YGL204CP53089 101 aa2.16□□□□□ -2.06
DNL4YOR005C AAH1P53909 347 aa2.16□□□□□ -2.06
DNL4YOR005C CTF19Q02732 369 aa2.16□□□□□ -2.06
DNL4YOR005C YDC1Q02896 317 aa2.16□□□□□ -2.06
DNL4YOR005C SNO1Q03144 224 aa2.16□□□□□ -2.06
DNL4YOR005C TFC7Q12415 435 aa2.16□□□□□ -2.06
DNL4YOR005C RPL13AQ12690 199 aaPredicted RBP2.16□□□□□ -2.06
DNL4YOR005C SLH1P53327 1967 aaKnown RBP2.16□□□□□ -2.06
DNL4YOR005C CPA1P07258 411 aaKnown RBP2.16□□□□□ -2.06
DNL4YOR005C RPL35AP0CX84 120 aaKnown RBP2.16□□□□□ -2.06
DNL4YOR005C RPL35BP0CX85 120 aaKnown RBP2.16□□□□□ -2.06
DNL4YOR005C ACP1P32463 125 aa2.16□□□□□ -2.06
DNL4YOR005C ALK2P32789 676 aaPredicted RBP2.16□□□□□ -2.06
DNL4YOR005C NTF2P33331 125 aaKnown RBP2.16□□□□□ -2.06
DNL4YOR005C MRPL15P36523 253 aa2.16□□□□□ -2.06
DNL4YOR005C SDH4P37298 181 aa2.16□□□□□ -2.06
DNL4YOR005C SEC72P39742 193 aaKnown RBP2.16□□□□□ -2.06
DNL4YOR005C PAU15P40585 124 aa2.16□□□□□ -2.06
DNL4YOR005C VMA21P41806 77 aa2.16□□□□□ -2.06
DNL4YOR005C DAN1P47178 298 aa2.16□□□□□ -2.06
DNL4YOR005C SOL1P50278 321 aa2.16□□□□□ -2.06
DNL4YOR005C ACT1P60010 375 aaKnown RBP2.16□□□□□ -2.06
DNL4YOR005C BRX1Q08235 291 aaKnown RBP2.16□□□□□ -2.06
DNL4YOR005C HNT3Q08702 217 aa2.16□□□□□ -2.06
DNL4YOR005C SCP1Q08873 200 aa2.16□□□□□ -2.06
DNL4YOR005C NDD1Q08887 554 aa2.16□□□□□ -2.06
DNL4YOR005C MMT2Q08970 484 aa2.16□□□□□ -2.06
DNL4YOR005C FCF2Q12035 217 aaPredicted RBP2.16□□□□□ -2.06
DNL4YOR005C YPR145C-AQ2V2P0 78 aa2.16□□□□□ -2.06
DNL4YOR005C YAL064W-BO13512 126 aa2.15□□□□□ -2.06
DNL4YOR005C CDC28P00546 298 aaKnown RBP2.15□□□□□ -2.06
DNL4YOR005C TRR1P29509 319 aaKnown RBP2.15□□□□□ -2.06
DNL4YOR005C TRS20P38334 175 aa2.15□□□□□ -2.06
DNL4YOR005C TRR2P38816 342 aa2.15□□□□□ -2.06
DNL4YOR005C YFL067WP43537 175 aa2.15□□□□□ -2.06
DNL4YOR005C ADO1P47143 340 aaKnown RBP2.15□□□□□ -2.06
DNL4YOR005C YJR111CP47148 283 aaKnown RBP2.15□□□□□ -2.06
DNL4YOR005C BNS1P50084 137 aa2.15□□□□□ -2.06
DNL4YOR005C YML018CQ03730 393 aa2.15□□□□□ -2.06
DNL4YOR005C CUE4Q04201 117 aaPredicted RBP2.15□□□□□ -2.06
DNL4YOR005C YMR252CQ04814 134 aa2.15□□□□□ -2.06
DNL4YOR005C MIM1Q08176 113 aa2.15□□□□□ -2.06
DNL4YOR005C YCL001W-BQ96VH2 84 aa2.15□□□□□ -2.06
DNL4YOR005C RPS8AP0CX39 200 aaKnown RBP2.15□□□□□ -2.07
DNL4YOR005C RPS8BP0CX40 200 aaKnown RBP2.15□□□□□ -2.07
DNL4YOR005C RPB3P16370 318 aaKnown RBP2.15□□□□□ -2.07
DNL4YOR005C MRPL20P22354 195 aaPredicted RBP2.15□□□□□ -2.07
DNL4YOR005C ERG24P32462 438 aaKnown RBP2.15□□□□□ -2.07
DNL4YOR005C MRPL27P36526 146 aaPredicted RBP2.15□□□□□ -2.07
DNL4YOR005C AVT7P40501 490 aa2.15□□□□□ -2.07
DNL4YOR005C APQ12P40532 138 aa2.15□□□□□ -2.07
DNL4YOR005C YJL213WP40896 331 aa2.15□□□□□ -2.07
DNL4YOR005C PAM16P42949 149 aa2.15□□□□□ -2.07
DNL4YOR005C CCC1P47818 322 aa2.15□□□□□ -2.07
DNL4YOR005C SCW4P53334 386 aaKnown RBP2.15□□□□□ -2.07
DNL4YOR005C FSH2Q05015 223 aa2.15□□□□□ -2.07
DNL4YOR005C ARC18Q05933 178 aaKnown RBP2.15□□□□□ -2.07
DNL4YOR005C SRL1Q08673 210 aa2.15□□□□□ -2.07
DNL4YOR005C YLR118CQ12354 227 aa2.15□□□□□ -2.07
DNL4YOR005C HMS1Q12398 434 aa2.15□□□□□ -2.07
DNL4YOR005C STT4P37297 1900 aa2.15□□□□□ -2.07
DNL4YOR005C GPX1P36014 167 aa2.14□□□□□ -2.07
DNL4YOR005C MRPS9P38120 278 aa2.14□□□□□ -2.07
DNL4YOR005C GIM4P40005 111 aaKnown RBP2.14□□□□□ -2.07
DNL4YOR005C EGT2P42835 1041 aa2.14□□□□□ -2.07
DNL4YOR005C YGL235WP53071 178 aa2.14□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 89.1 ms