RNA–Protein interactions for RNA: YIL076W

SEC28, Transcript of Epsilon-COP subunit of the coatomer, yeastyeast

Gene SEC28, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC28YIL076W CDC123Q05791 360 aa1.34□□□□□ -2.19
SEC28YIL076W RRS1Q08746 203 aaKnown RBP1.34□□□□□ -2.19
SEC28YIL076W TPO4Q12256 659 aa1.34□□□□□ -2.19
SEC28YIL076W URA2P07259 2214 aaKnown RBP1.34□□□□□ -2.2
SEC28YIL076W TRX3P25372 127 aa1.33□□□□□ -2.2
SEC28YIL076W MGT1P26188 188 aa1.33□□□□□ -2.2
SEC28YIL076W PTM1P32857 523 aa1.33□□□□□ -2.2
SEC28YIL076W APQ12P40532 138 aa1.33□□□□□ -2.2
SEC28YIL076W NUP57P48837 541 aa1.33□□□□□ -2.2
SEC28YIL076W BOL2P53082 120 aa1.33□□□□□ -2.2
SEC28YIL076W ERV29P53337 310 aa1.33□□□□□ -2.2
SEC28YIL076W RPL22BP56628 122 aaKnown RBP1.33□□□□□ -2.2
SEC28YIL076W GAS3Q03655 524 aa1.33□□□□□ -2.2
SEC28YIL076W NIP7Q08962 181 aaKnown RBP1.33□□□□□ -2.2
SEC28YIL076W YRA1Q12159 226 aaKnown RBP1.33□□□□□ -2.2
SEC28YIL076W RIO1Q12196 484 aaKnown RBP1.33□□□□□ -2.2
SEC28YIL076W YOR032W-AQ8TGS1 66 aa1.33□□□□□ -2.2
SEC28YIL076W DYN1P36022 4092 aa1.32□□□□□ -2.2
SEC28YIL076W RSR1P13856 272 aa1.32□□□□□ -2.2
SEC28YIL076W TAH1P25638 111 aaPredicted RBP1.32□□□□□ -2.2
SEC28YIL076W SUI1P32911 108 aaKnown RBP1.32□□□□□ -2.2
SEC28YIL076W POP4P38336 279 aa1.32□□□□□ -2.2
SEC28YIL076W RPL33BP41056 107 aaKnown RBP1.32□□□□□ -2.2
SEC28YIL076W HOC1P47124 396 aa1.32□□□□□ -2.2
SEC28YIL076W YMR030W-AQ3E760 96 aa1.32□□□□□ -2.2
SEC28YIL076W CMD1P06787 147 aaKnown RBP1.31□□□□□ -2.2
SEC28YIL076W GPA2P10823 449 aa1.31□□□□□ -2.2
SEC28YIL076W SEC14P24280 304 aaKnown RBP1.31□□□□□ -2.2
SEC28YIL076W RNA15P25299 296 aaPredicted RBP1.31□□□□□ -2.2
SEC28YIL076W RPF1P38805 295 aaKnown RBP1.31□□□□□ -2.2
SEC28YIL076W PET100P38958 111 aa1.31□□□□□ -2.2
SEC28YIL076W YER034WP40022 185 aaKnown RBP1.31□□□□□ -2.2
SEC28YIL076W YPR174CQ06616 221 aaPredicted RBP1.31□□□□□ -2.2
SEC28YIL076W YET3Q07451 203 aa1.31□□□□□ -2.2
SEC28YIL076W MSA1Q08471 629 aa1.31□□□□□ -2.2
SEC28YIL076W MDM32Q12171 622 aa1.31□□□□□ -2.2
SEC28YIL076W RUD3Q12234 484 aaKnown RBP1.31□□□□□ -2.2
SEC28YIL076W GCY1P14065 312 aaKnown RBP RIP-Chip data1.3□□□□□ -2.2not detected
SEC28YIL076W RPS1AP33442 255 aaKnown RBP1.3□□□□□ -2.2
SEC28YIL076W ETR1P38071 380 aa1.3□□□□□ -2.2
SEC28YIL076W ECM33P38248 429 aaKnown RBP1.3□□□□□ -2.2
SEC28YIL076W YHL037CP38733 133 aa1.3□□□□□ -2.2
SEC28YIL076W RAD17P48581 401 aa1.3□□□□□ -2.2
SEC28YIL076W MPA43P53583 542 aaPredicted RBP1.3□□□□□ -2.2
SEC28YIL076W NHP10Q03435 203 aa1.3□□□□□ -2.2
SEC28YIL076W CSN9Q03981 162 aa1.3□□□□□ -2.2
SEC28YIL076W YCT1Q12235 531 aa1.3□□□□□ -2.2
SEC28YIL076W YOR020W-AQ3E824 90 aa1.3□□□□□ -2.2
SEC28YIL076W CDC36P06100 191 aaPredicted RBP1.29□□□□□ -2.2
SEC28YIL076W YCR090CP25654 182 aaKnown RBP1.29□□□□□ -2.2
SEC28YIL076W BIG1P38813 335 aa1.29□□□□□ -2.2
SEC28YIL076W BFR1P38934 470 aaKnown RBP RIP-Chip data1.29□□□□□ -2.2 RIP-Chip
SEC28YIL076W ALB1P47019 175 aaPredicted RBP1.29□□□□□ -2.2
SEC28YIL076W HAM1P47119 197 aaKnown RBP1.29□□□□□ -2.2
SEC28YIL076W LSM3P57743 89 aaKnown RBP1.29□□□□□ -2.2
SEC28YIL076W GRE1Q08969 168 aa1.29□□□□□ -2.2
SEC28YIL076W YSF3P0C074 85 aaPredicted RBP1.28□□□□□ -2.2
SEC28YIL076W FCY2P17064 533 aa1.28□□□□□ -2.2
SEC28YIL076W ERD2P18414 219 aa1.28□□□□□ -2.2
SEC28YIL076W RPB4P20433 221 aaPredicted RBP1.28□□□□□ -2.2
SEC28YIL076W PBN1P25580 416 aa1.28□□□□□ -2.2
SEC28YIL076W RPS5P26783 225 aaKnown RBP1.28□□□□□ -2.2
SEC28YIL076W HSP150P32478 413 aa1.28□□□□□ -2.2
SEC28YIL076W UBC6P33296 250 aaPredicted RBP1.28□□□□□ -2.2
SEC28YIL076W SMX2P40204 77 aaKnown RBP1.28□□□□□ -2.2
SEC28YIL076W TIR3P40552 269 aa1.28□□□□□ -2.2
SEC28YIL076W AIF1P52923 378 aa1.28□□□□□ -2.2
SEC28YIL076W EFM5P53200 248 aaKnown RBP1.28□□□□□ -2.2
SEC28YIL076W YLR460CP54007 376 aa1.28□□□□□ -2.2
SEC28YIL076W YCL012CQ8J0M4 134 aa1.28□□□□□ -2.2
SEC28YIL076W Q0297Q9ZZV8 51 aa1.28□□□□□ -2.2
SEC28YIL076W MDN1Q12019 4910 aaKnown RBP1.28□□□□□ -2.2
SEC28YIL076W MRPL25P23369 157 aa1.27□□□□□ -2.21
SEC28YIL076W FES1P38260 290 aa1.27□□□□□ -2.21
SEC28YIL076W YMR144WP40214 342 aaKnown RBP1.27□□□□□ -2.21
SEC28YIL076W SOK1P40317 901 aa1.27□□□□□ -2.21
SEC28YIL076W CAT5P41735 233 aa1.27□□□□□ -2.21
SEC28YIL076W YRB1P41920 201 aaKnown RBP1.27□□□□□ -2.21
SEC28YIL076W YFL051CP43552 160 aa1.27□□□□□ -2.21
SEC28YIL076W APS3P47064 194 aa1.27□□□□□ -2.21
SEC28YIL076W NCE101Q02820 53 aa1.27□□□□□ -2.21
SEC28YIL076W HPT1Q04178 221 aaKnown RBP1.27□□□□□ -2.21
SEC28YIL076W RNH1Q04740 348 aa1.27□□□□□ -2.21
SEC28YIL076W SEI1Q06058 285 aa1.27□□□□□ -2.21
SEC28YIL076W SDO1Q07953 250 aaKnown RBP1.27□□□□□ -2.21
SEC28YIL076W YOL131WQ08270 108 aa1.27□□□□□ -2.21
SEC28YIL076W GET4Q12125 312 aa1.27□□□□□ -2.21
SEC28YIL076W SNU23Q12368 194 aaPredicted RBP1.27□□□□□ -2.21
SEC28YIL076W YKL018C-AQ3E7A7 99 aa1.27□□□□□ -2.21
SEC28YIL076W YPL229WQ99395 206 aa1.27□□□□□ -2.21
SEC28YIL076W Q0144Q9ZZW2 109 aa1.27□□□□□ -2.21
SEC28YIL076W CDC8P00572 216 aa1.26□□□□□ -2.21
SEC28YIL076W QCR8P08525 94 aa1.26□□□□□ -2.21
SEC28YIL076W YFR010W-AP0C5N0 62 aa1.26□□□□□ -2.21
SEC28YIL076W YHR214C-DP0CX93 97 aa1.26□□□□□ -2.21
SEC28YIL076W KSS1P14681 368 aa1.26□□□□□ -2.21
SEC28YIL076W BUB2P26448 306 aaPredicted RBP1.26□□□□□ -2.21
SEC28YIL076W YCR087C-AP37263 153 aa1.26□□□□□ -2.21
SEC28YIL076W YBR032WP38223 100 aa1.26□□□□□ -2.21
SEC28YIL076W AIM2P39721 246 aa1.26□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 76.4 ms