RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	BUB2	P26448	306 aa	Predicted RBP	0.83	□□□□□ -2.28
RTR1	YER139C	MEI4	P29467	408 aa		0.83	□□□□□ -2.28
RTR1	YER139C	TCA17	P32613	152 aa		0.83	□□□□□ -2.28
RTR1	YER139C	SRP102	P36057	244 aa	Predicted RBP	0.83	□□□□□ -2.28
RTR1	YER139C	UTP30	P36144	274 aa	Known RBP	0.83	□□□□□ -2.28
RTR1	YER139C	FIG1	P38224	298 aa		0.83	□□□□□ -2.28
RTR1	YER139C	RPL33B	P41056	107 aa	Known RBP	0.83	□□□□□ -2.28
RTR1	YER139C	GPI14	P47088	403 aa	Known RBP	0.83	□□□□□ -2.28
RTR1	YER139C	ARP3	P47117	449 aa	Known RBP	0.83	□□□□□ -2.28
RTR1	YER139C	SAY1	P53324	424 aa		0.83	□□□□□ -2.28
RTR1	YER139C	YNL140C	P53910	189 aa		0.83	□□□□□ -2.28
RTR1	YER139C	YDR249C	Q03787	373 aa		0.83	□□□□□ -2.28
RTR1	YER139C	RRP17	Q04031	235 aa	Predicted RBP	0.83	□□□□□ -2.28
RTR1	YER139C	ARO80	Q04052	950 aa		0.83	□□□□□ -2.28
RTR1	YER139C	TRM12	Q04235	462 aa		0.83	□□□□□ -2.28
RTR1	YER139C	YLR053C	Q12026	108 aa		0.83	□□□□□ -2.28
RTR1	YER139C	YLR050C	Q12155	161 aa	Known RBP	0.83	□□□□□ -2.28
RTR1	YER139C	MPD1	Q12404	318 aa	Known RBP	0.83	□□□□□ -2.28
RTR1	YER139C	YHR139C-A	O13536	103 aa		0.82	□□□□□ -2.28
RTR1	YER139C	CNB1	P25296	175 aa		0.82	□□□□□ -2.28
RTR1	YER139C	YGL010W	P25338	174 aa		0.82	□□□□□ -2.28
RTR1	YER139C	YKL102C	P34249	101 aa		0.82	□□□□□ -2.28
RTR1	YER139C	PAN3	P36102	679 aa	Predicted RBP	0.82	□□□□□ -2.28
RTR1	YER139C	TVP38	P36164	337 aa		0.82	□□□□□ -2.28
RTR1	YER139C	MRPL17	P36528	281 aa		0.82	□□□□□ -2.28
RTR1	YER139C	UMP1	P38293	148 aa		0.82	□□□□□ -2.28
RTR1	YER139C	YBR285W	P38354	144 aa		0.82	□□□□□ -2.28
RTR1	YER139C	NSG1	P38837	291 aa		0.82	□□□□□ -2.28
RTR1	YER139C	NVJ1	P38881	321 aa		0.82	□□□□□ -2.28
RTR1	YER139C	YEA4	P40004	342 aa		0.82	□□□□□ -2.28
RTR1	YER139C	YER134C	P40081	178 aa		0.82	□□□□□ -2.28
RTR1	YER139C	YNL217W	P40152	326 aa		0.82	□□□□□ -2.28
RTR1	YER139C	RFC2	P40348	353 aa		0.82	□□□□□ -2.28
RTR1	YER139C	TIR3	P40552	269 aa		0.82	□□□□□ -2.28
RTR1	YER139C	CUP9	P41817	306 aa		0.82	□□□□□ -2.28
RTR1	YER139C	SBH1	P52870	82 aa		0.82	□□□□□ -2.28
RTR1	YER139C	YNL247W	P53852	767 aa	Known RBP	0.82	□□□□□ -2.28
RTR1	YER139C	NUP49	Q02199	472 aa		0.82	□□□□□ -2.28
RTR1	YER139C	VPS28	Q02767	242 aa		0.82	□□□□□ -2.28
RTR1	YER139C	YMR099C	Q03161	297 aa	Known RBP	0.82	□□□□□ -2.28
RTR1	YER139C	HPT1	Q04178	221 aa	Known RBP	0.82	□□□□□ -2.28
RTR1	YER139C	SPG3	Q04398	127 aa	Predicted RBP	0.82	□□□□□ -2.28
RTR1	YER139C	YMR315W	Q04869	349 aa	Known RBP	0.82	□□□□□ -2.28
RTR1	YER139C	DYN3	Q04949	312 aa		0.82	□□□□□ -2.28
RTR1	YER139C	MCP1	Q12106	302 aa		0.82	□□□□□ -2.28
RTR1	YER139C	YAR023C	D6VPM8	179 aa		0.81	□□□□□ -2.28
RTR1	YER139C	PEX34	P25584	144 aa		0.81	□□□□□ -2.28
RTR1	YER139C	SEC17	P32602	292 aa		0.81	□□□□□ -2.28
RTR1	YER139C	UBC6	P33296	250 aa	Predicted RBP	0.81	□□□□□ -2.28
RTR1	YER139C	TMA19	P35691	167 aa	Known RBP	0.81	□□□□□ -2.28
RTR1	YER139C	YKR045C	P36138	183 aa		0.81	□□□□□ -2.28
RTR1	YER139C	DER1	P38307	211 aa		0.81	□□□□□ -2.28
RTR1	YER139C	YBR209W	P38311	105 aa		0.81	□□□□□ -2.28
RTR1	YER139C	YBR219C	P38317	127 aa		0.81	□□□□□ -2.28
RTR1	YER139C	YBR220C	P38318	560 aa		0.81	□□□□□ -2.28
RTR1	YER139C	YHR180W	P38868	163 aa		0.81	□□□□□ -2.28
RTR1	YER139C	YER121W	P40076	114 aa		0.81	□□□□□ -2.28
RTR1	YER139C	RPL13B	P40212	199 aa	Known RBP	0.81	□□□□□ -2.28
RTR1	YER139C	SOK1	P40317	901 aa		0.81	□□□□□ -2.28
RTR1	YER139C	AGE2	P40529	298 aa		0.81	□□□□□ -2.28
RTR1	YER139C	SER2	P42941	309 aa		0.81	□□□□□ -2.28
RTR1	YER139C	YJR111C	P47148	283 aa	Known RBP	0.81	□□□□□ -2.28
RTR1	YER139C	TDA4	P47153	279 aa		0.81	□□□□□ -2.28
RTR1	YER139C	UBC12	P52491	188 aa		0.81	□□□□□ -2.28
RTR1	YER139C	PGA1	P53896	198 aa		0.81	□□□□□ -2.28
RTR1	YER139C	HHT1	P61830	136 aa		0.81	□□□□□ -2.28
RTR1	YER139C	VPS71	Q03433	280 aa		0.81	□□□□□ -2.28
RTR1	YER139C	GPI17	Q04080	534 aa		0.81	□□□□□ -2.28
RTR1	YER139C	YDR391C	Q04170	232 aa		0.81	□□□□□ -2.28
RTR1	YER139C	SHH3	Q04487	196 aa		0.81	□□□□□ -2.28
RTR1	YER139C	SML1	Q04964	104 aa		0.81	□□□□□ -2.28
RTR1	YER139C	SMD2	Q06217	110 aa	Known RBP	0.81	□□□□□ -2.28
RTR1	YER139C	HRD1	Q08109	551 aa		0.81	□□□□□ -2.28
RTR1	YER139C	RDI1	Q12434	202 aa		0.81	□□□□□ -2.28
RTR1	YER139C	RPL13A	Q12690	199 aa	Predicted RBP	0.81	□□□□□ -2.28
RTR1	YER139C	ODC2	Q99297	307 aa		0.81	□□□□□ -2.28
RTR1	YER139C	PET20	Q99373	253 aa		0.81	□□□□□ -2.28
RTR1	YER139C	POR1	P04840	283 aa	Known RBP	0.8	□□□□□ -2.28
RTR1	YER139C	PET54	P10834	293 aa		0.8	□□□□□ -2.28
RTR1	YER139C	ATP15	P21306	62 aa		0.8	□□□□□ -2.28
RTR1	YER139C	STP22	P25604	385 aa		0.8	□□□□□ -2.28
RTR1	YER139C	TFC1	P32367	649 aa		0.8	□□□□□ -2.28
RTR1	YER139C	YKR041W	P36134	250 aa		0.8	□□□□□ -2.28
RTR1	YER139C	MAK5	P38112	773 aa	Predicted RBP	0.8	□□□□□ -2.28
RTR1	YER139C	OPY1	P38271	328 aa		0.8	□□□□□ -2.28
RTR1	YER139C	EDC3	P39998	551 aa	Known RBP	0.8	□□□□□ -2.28
RTR1	YER139C	RIO2	P40160	425 aa	Known RBP	0.8	□□□□□ -2.28
RTR1	YER139C	ERJ5	P43613	295 aa	Predicted RBP	0.8	□□□□□ -2.28
RTR1	YER139C	SKI6	P46948	246 aa	Predicted RBP	0.8	□□□□□ -2.28
RTR1	YER139C	XPT1	P47165	209 aa		0.8	□□□□□ -2.28
RTR1	YER139C	YGL101W	P53144	215 aa		0.8	□□□□□ -2.28
RTR1	YER139C	MPA43	P53583	542 aa	Predicted RBP	0.8	□□□□□ -2.28
RTR1	YER139C	CUE4	Q04201	117 aa	Predicted RBP	0.8	□□□□□ -2.28
RTR1	YER139C	YPR174C	Q06616	221 aa	Predicted RBP	0.8	□□□□□ -2.28
RTR1	YER139C	YLR046C	Q12253	270 aa		0.8	□□□□□ -2.28
RTR1	YER139C	YOR214C	Q12282	236 aa		0.8	□□□□□ -2.28
RTR1	YER139C	PDR18	P53756	1333 aa		0.8	□□□□□ -2.28
RTR1	YER139C	TRM3	Q07527	1436 aa		0.8	□□□□□ -2.28
RTR1	YER139C	RAD6	P06104	172 aa		0.79	□□□□□ -2.28
RTR1	YER139C	GPA2	P10823	449 aa		0.79	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms