RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W SEN2P16658 377 aa5.04□□□□□ -1.6
CAF40YNL288W MIR1P23641 311 aaKnown RBP5.04□□□□□ -1.6
CAF40YNL288W RNA14P25298 677 aaKnown RBP5.04□□□□□ -1.6
CAF40YNL288W YCP4P25349 247 aaKnown RBP5.04□□□□□ -1.6
CAF40YNL288W RPB9P27999 122 aa5.04□□□□□ -1.6
CAF40YNL288W MRP20P32387 263 aa5.04□□□□□ -1.6
CAF40YNL288W VMA11P32842 164 aa5.04□□□□□ -1.6
CAF40YNL288W PAN3P36102 679 aaPredicted RBP5.04□□□□□ -1.6
CAF40YNL288W LAG1P38703 411 aa5.04□□□□□ -1.6
CAF40YNL288W RPA34P47006 233 aaPredicted RBP5.04□□□□□ -1.6
CAF40YNL288W YGL114WP53134 725 aa5.04□□□□□ -1.6
CAF40YNL288W MRPS16Q02608 121 aa5.04□□□□□ -1.6
CAF40YNL288W DPB4Q04603 196 aaKnown RBP5.04□□□□□ -1.6
CAF40YNL288W YOR192C-CQ3E736 78 aa5.04□□□□□ -1.6
CAF40YNL288W YPR108W-AQ3E7B3 70 aa5.04□□□□□ -1.6
CAF40YNL288W CDC43P18898 376 aa5.03□□□□□ -1.6
CAF40YNL288W LSB5P25369 354 aa5.03□□□□□ -1.6
CAF40YNL288W BUD23P25627 275 aaPredicted RBP5.03□□□□□ -1.6
CAF40YNL288W TRR1P29509 319 aaKnown RBP5.03□□□□□ -1.6
CAF40YNL288W UTP30P36144 274 aaKnown RBP5.03□□□□□ -1.6
CAF40YNL288W POP8P38208 133 aa5.03□□□□□ -1.6
CAF40YNL288W YAP1802P53309 568 aa5.03□□□□□ -1.6
CAF40YNL288W WSC2P53832 503 aa5.03□□□□□ -1.6
CAF40YNL288W CAB5Q03941 241 aa5.03□□□□□ -1.6
CAF40YNL288W VBA1Q04301 562 aa5.03□□□□□ -1.6
CAF40YNL288W RIM9Q04734 239 aa5.03□□□□□ -1.6
CAF40YNL288W ADH6Q04894 360 aaKnown RBP5.03□□□□□ -1.6
CAF40YNL288W YOL029CQ08187 201 aa5.03□□□□□ -1.6
CAF40YNL288W YOR292CQ08743 309 aa5.03□□□□□ -1.6
CAF40YNL288W TFC7Q12415 435 aa5.03□□□□□ -1.6
CAF40YNL288W DAL3P32459 195 aa5.02□□□□□ -1.61
CAF40YNL288W CBT1P36038 271 aaPredicted RBP5.02□□□□□ -1.61
CAF40YNL288W IKI1P38874 309 aa5.02□□□□□ -1.61
CAF40YNL288W POP2P39008 433 aa5.02□□□□□ -1.61
CAF40YNL288W YER188WP40103 239 aa5.02□□□□□ -1.61
CAF40YNL288W BNA1P47096 177 aa5.02□□□□□ -1.61
CAF40YNL288W YGL262WP53054 175 aa5.02□□□□□ -1.61
CAF40YNL288W MEH1Q02205 184 aa5.02□□□□□ -1.61
CAF40YNL288W TSA2Q04120 196 aa5.02□□□□□ -1.61
CAF40YNL288W YMR317WQ04893 1140 aa5.02□□□□□ -1.61
CAF40YNL288W YOL118CQ08259 102 aa5.02□□□□□ -1.61
CAF40YNL288W RAD52P06778 471 aaKnown RBP5.01□□□□□ -1.61
CAF40YNL288W BGL2P15703 313 aaKnown RBP5.01□□□□□ -1.61
CAF40YNL288W MRP17P28778 131 aa5.01□□□□□ -1.61
CAF40YNL288W SPS18P32572 300 aa5.01□□□□□ -1.61
CAF40YNL288W ADH5P38113 351 aaKnown RBP5.01□□□□□ -1.61
CAF40YNL288W COS8P38723 381 aa5.01□□□□□ -1.61
CAF40YNL288W SSO2P39926 295 aa5.01□□□□□ -1.61
CAF40YNL288W PCL7P40186 285 aa5.01□□□□□ -1.61
CAF40YNL288W YJL118WP47022 219 aa5.01□□□□□ -1.61
CAF40YNL288W NIF3P53081 288 aa5.01□□□□□ -1.61
CAF40YNL288W YPD1Q07688 167 aa5.01□□□□□ -1.61
CAF40YNL288W SWT1Q12104 458 aa5.01□□□□□ -1.61
CAF40YNL288W BPH1P25356 2167 aa5.01□□□□□ -1.61
CAF40YNL288W CCW14O13547 238 aa5□□□□□ -1.61
CAF40YNL288W YCR016WP25617 290 aaKnown RBP5□□□□□ -1.61
CAF40YNL288W SUA7P29055 345 aaPredicted RBP5□□□□□ -1.61
CAF40YNL288W ERG2P32352 222 aa5□□□□□ -1.61
CAF40YNL288W SUA5P32579 426 aa5□□□□□ -1.61
CAF40YNL288W ECM31P38122 312 aa5□□□□□ -1.61
CAF40YNL288W BFR1P38934 470 aaKnown RBP RIP-Chip data5□□□□□ -1.61 RIP-Chip
CAF40YNL288W PUS4P48567 403 aaKnown RBP5□□□□□ -1.61
CAF40YNL288W THI74Q04083 370 aa5□□□□□ -1.61
CAF40YNL288W LPP1Q04396 274 aa5□□□□□ -1.61
CAF40YNL288W RTT103Q05543 409 aa5□□□□□ -1.61
CAF40YNL288W YDL086WQ07505 273 aa5□□□□□ -1.61
CAF40YNL288W SCM3Q12334 223 aa5□□□□□ -1.61
CAF40YNL288W PRM4Q12498 284 aa5□□□□□ -1.61
CAF40YNL288W QCR2P07257 368 aa4.99□□□□□ -1.61
CAF40YNL288W PUT1P09368 476 aa4.99□□□□□ -1.61
CAF40YNL288W YMR31P19955 123 aa4.99□□□□□ -1.61
CAF40YNL288W SRY1P36007 326 aa4.99□□□□□ -1.61
CAF40YNL288W PMU1P36069 295 aa4.99□□□□□ -1.61
CAF40YNL288W GPP2P40106 250 aaKnown RBP4.99□□□□□ -1.61
CAF40YNL288W MRPL13Q02204 264 aa4.99□□□□□ -1.61
CAF40YNL288W HRD1Q08109 551 aa4.99□□□□□ -1.61
CAF40YNL288W BOL1Q3E793 110 aa4.99□□□□□ -1.61
CAF40YNL288W HUG1Q6Q5K6 68 aa4.99□□□□□ -1.61
CAF40YNL288W RPL9AP05738 191 aaKnown RBP4.98□□□□□ -1.61
CAF40YNL288W ARG80P07249 177 aa4.98□□□□□ -1.61
CAF40YNL288W PHO85P17157 305 aa4.98□□□□□ -1.61
CAF40YNL288W ROX3P25046 220 aa4.98□□□□□ -1.61
CAF40YNL288W YPC1P38298 316 aa4.98□□□□□ -1.61
CAF40YNL288W NOP16P40007 231 aaKnown RBP4.98□□□□□ -1.61
CAF40YNL288W YFL015CP43578 164 aa4.98□□□□□ -1.61
CAF40YNL288W RPL9BP51401 191 aaKnown RBP4.98□□□□□ -1.61
CAF40YNL288W COX18P53239 316 aa4.98□□□□□ -1.61
CAF40YNL288W APJ1P53940 528 aa4.98□□□□□ -1.61
CAF40YNL288W MOT3P54785 490 aaKnown RBP4.98□□□□□ -1.61
CAF40YNL288W STD1Q02794 444 aa4.98□□□□□ -1.61
CAF40YNL288W YPL108WQ02872 168 aaPredicted RBP4.98□□□□□ -1.61
CAF40YNL288W MIX17Q03667 156 aa4.98□□□□□ -1.61
CAF40YNL288W YFH1Q07540 174 aa4.98□□□□□ -1.61
CAF40YNL288W TFB5Q3E7C1 72 aaPredicted RBP4.98□□□□□ -1.61
CAF40YNL288W OLE1P21147 510 aaKnown RBP4.97□□□□□ -1.61
CAF40YNL288W PPQ1P32945 549 aa4.97□□□□□ -1.61
CAF40YNL288W CUE1P38428 203 aa4.97□□□□□ -1.61
CAF40YNL288W YHR138CP38841 114 aaPredicted RBP4.97□□□□□ -1.61
CAF40YNL288W RPL13BP40212 199 aaKnown RBP4.97□□□□□ -1.61
CAF40YNL288W YJR056CP47115 236 aa4.97□□□□□ -1.61
Retrieved 100 of 5,963 RNA–protein pairs in 19.8 ms