RNA–Protein interactions for RNA: YPL085W

SEC16, Transcript of COPII vesicle coat protein required for ER transport vesicle budding, yeastyeast

Gene SEC16, Length 6,588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC16YPL085W ATG13Q06628 738 aa2.56□□□□□ -2
SEC16YPL085W IMH1Q06704 911 aaKnown RBP2.56□□□□□ -2
SEC16YPL085W TY3A-GQ12173 290 aa2.56□□□□□ -2
SEC16YPL085W TY3A-IQ99219 290 aa2.56□□□□□ -2
SEC16YPL085W SEC8P32855 1065 aa2.56□□□□□ -2
SEC16YPL085W MET1P36150 593 aa2.56□□□□□ -2
SEC16YPL085W SPC72P39723 622 aa2.56□□□□□ -2
SEC16YPL085W DSL1P53847 754 aa2.56□□□□□ -2
SEC16YPL085W DMA2P53924 522 aa2.56□□□□□ -2
SEC16YPL085W SEC5P89102 971 aa2.56□□□□□ -2
SEC16YPL085W PET123P17558 318 aa2.55□□□□□ -2
SEC16YPL085W RME1P32338 300 aaKnown RBP2.55□□□□□ -2
SEC16YPL085W SQT1P35184 431 aa2.55□□□□□ -2
SEC16YPL085W PFF1P38244 976 aa2.55□□□□□ -2
SEC16YPL085W CRG1P38892 291 aaRIP-Chip data2.55□□□□□ -2 RIP-Chip
SEC16YPL085W FUN12P39730 1002 aaKnown RBP2.55□□□□□ -2
SEC16YPL085W ROG3P43602 733 aa2.55□□□□□ -2
SEC16YPL085W SOL4P53315 255 aa2.55□□□□□ -2
SEC16YPL085W GDE1Q02979 1223 aa2.55□□□□□ -2
SEC16YPL085W CUR1Q06469 252 aa2.55□□□□□ -2
SEC16YPL085W SET1P38827 1080 aaKnown RBP2.55□□□□□ -2
SEC16YPL085W SNU66Q12420 587 aaPredicted RBP2.55□□□□□ -2
SEC16YPL085W NUP188P52593 1655 aaKnown RBP2.55□□□□□ -2
SEC16YPL085W PGI1P12709 554 aaKnown RBP2.55□□□□□ -2
SEC16YPL085W CBP3P21560 335 aa2.55□□□□□ -2
SEC16YPL085W RRP1P35178 278 aaPredicted RBP2.55□□□□□ -2
SEC16YPL085W CAB3P36076 571 aa2.55□□□□□ -2
SEC16YPL085W NAB3P38996 802 aaKnown RBP RIP-Chip data2.55□□□□□ -2 RIP-Chip
SEC16YPL085W YGR130CP53278 816 aa2.55□□□□□ -2
SEC16YPL085W HST1P53685 503 aa2.55□□□□□ -2
SEC16YPL085W BUG1Q12191 341 aa2.55□□□□□ -2
SEC16YPL085W CKA2P19454 339 aa2.55□□□□□ -2
SEC16YPL085W SKI2P35207 1287 aaKnown RBP RIP-Chip data2.55□□□□□ -2not detected
SEC16YPL085W RPN1P38764 993 aaKnown RBP2.55□□□□□ -2
SEC16YPL085W EEB1Q02891 456 aa2.55□□□□□ -2
SEC16YPL085W UTP14Q04500 899 aaKnown RBP2.55□□□□□ -2
SEC16YPL085W SIT4P20604 311 aa2.54□□□□□ -2
SEC16YPL085W SPB4P25808 606 aaPredicted RBP2.54□□□□□ -2
SEC16YPL085W BMH2P34730 273 aaKnown RBP2.54□□□□□ -2
SEC16YPL085W TIF1P10081 395 aaKnown RBP2.54□□□□□ -2
SEC16YPL085W RSM25P40496 264 aa2.54□□□□□ -2
SEC16YPL085W SPO14P36126 1683 aa2.54□□□□□ -2
SEC16YPL085W MRF1P30775 413 aaPredicted RBP2.54□□□□□ -2
SEC16YPL085W PRD1P25375 712 aa2.54□□□□□ -2
SEC16YPL085W PRS1P32895 427 aaKnown RBP2.54□□□□□ -2
SEC16YPL085W YKL133CP36066 463 aa2.54□□□□□ -2
SEC16YPL085W YDR341CQ05506 607 aaKnown RBP2.54□□□□□ -2
SEC16YPL085W TPM2P40414 161 aa2.54□□□□□ -2
SEC16YPL085W BBC1P47068 1157 aa2.54□□□□□ -2
SEC16YPL085W SHE10P53075 577 aa2.54□□□□□ -2
SEC16YPL085W PUF6Q04373 656 aaKnown RBP2.54□□□□□ -2
SEC16YPL085W PET111P08468 800 aa2.53□□□□□ -2
SEC16YPL085W AFT1P22149 690 aa2.53□□□□□ -2
SEC16YPL085W RFT1P38206 574 aaPredicted RBP2.53□□□□□ -2
SEC16YPL085W HMF1P40037 129 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W SAP155P43612 1002 aa2.53□□□□□ -2
SEC16YPL085W TMA64Q04600 565 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W PRT1P06103 763 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W CDC16P09798 840 aa2.53□□□□□ -2
SEC16YPL085W SMC1P32908 1225 aa2.53□□□□□ -2
SEC16YPL085W VPS41P38959 992 aa2.53□□□□□ -2
SEC16YPL085W SMC2P38989 1170 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W PAP2P53632 584 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W ARD1P07347 238 aaPredicted RBP2.53□□□□□ -2
SEC16YPL085W DIT2P21595 489 aa2.53□□□□□ -2
SEC16YPL085W XKS1P42826 600 aa2.53□□□□□ -2
SEC16YPL085W PSD2P53037 1138 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W COG4Q06096 861 aa2.53□□□□□ -2
SEC16YPL085W SUB2Q07478 446 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W POM152P39685 1337 aa2.53□□□□□ -2
SEC16YPL085W SEC7P11075 2009 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W MRP7P12687 371 aa2.53□□□□□ -2
SEC16YPL085W PTK2P47116 818 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W MDR1P53258 950 aa2.53□□□□□ -2
SEC16YPL085W HEF3P53978 1044 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W MDM1Q01846 1127 aa2.53□□□□□ -2
SEC16YPL085W ERO1Q03103 563 aa2.53□□□□□ -2
SEC16YPL085W PCL8Q08966 492 aa2.53□□□□□ -2
SEC16YPL085W RNA1P11745 407 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W YNG2P38806 282 aaKnown RBP2.53□□□□□ -2
SEC16YPL085W CIR1P42940 261 aa2.53□□□□□ -2
SEC16YPL085W YNL011CP53980 444 aa2.53□□□□□ -2
SEC16YPL085W FMP30Q02883 468 aa2.53□□□□□ -2
SEC16YPL085W BUB1P41695 1021 aaKnown RBP RIP-Chip data2.52□□□□□ -2.01not detected
SEC16YPL085W SYF1Q04048 859 aaPredicted RBP2.52□□□□□ -2.01
SEC16YPL085W BMS1Q08965 1183 aaKnown RBP2.52□□□□□ -2.01
SEC16YPL085W SAS3P34218 831 aa2.52□□□□□ -2.01
SEC16YPL085W YKL222CP35995 705 aa2.52□□□□□ -2.01
SEC16YPL085W VPS72Q03388 795 aa2.52□□□□□ -2.01
SEC16YPL085W MCM3P24279 971 aaKnown RBP2.52□□□□□ -2.01
SEC16YPL085W RSC30P38781 883 aa2.52□□□□□ -2.01
SEC16YPL085W THI12P42883 340 aa2.52□□□□□ -2.01
SEC16YPL085W THI5P43534 340 aa2.52□□□□□ -2.01
SEC16YPL085W THI11P47183 340 aa2.52□□□□□ -2.01
SEC16YPL085W YDR306CQ06640 478 aa2.52□□□□□ -2.01
SEC16YPL085W THI13Q07748 340 aa2.52□□□□□ -2.01
SEC16YPL085W RIX7Q07844 837 aaKnown RBP2.52□□□□□ -2.01
SEC16YPL085W MCD1Q12158 566 aa2.52□□□□□ -2.01
SEC16YPL085W TY1B-DR3Q99231 1755 aa2.52□□□□□ -2.01
SEC16YPL085W SNF1P06782 633 aaKnown RBP2.52□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 85.2 ms