RNA–Protein interactions for RNA: ENSMUST00000034060.6

Sh3rf1-201, Transcript of E3 ubiquitin-protein ligase SH3RF1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Sh3rf1, Length 5,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1-201ENSMUST00000034060 Ipo4Q8VI75 1082 aa28.09■■■□□ 2.09
Sh3rf1-201ENSMUST00000034060 HdgfP51859 237 aaKnown RBP28.08■■■□□ 2.09
Sh3rf1-201ENSMUST00000034060 Ubxn4Q8VCH8 506 aa28.08■■■□□ 2.09
Sh3rf1-201ENSMUST00000034060 Pnmal2G3X9N3 661 aa28.08■■■□□ 2.09
Sh3rf1-201ENSMUST00000034060 Gcom1E9PZ54 550 aa28.08■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 MyzapQ3UIJ9 466 aa28.08■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Ttll13A4Q9F6 804 aa28.07■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Kif3bQ61771 747 aa28.07■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 PhaxQ9JJT9 385 aaKnown RBP28.07■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 MyclP10166 368 aa28.07■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Mcm2P97310 904 aa28.07■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Gpatch3Q8BIY1 525 aa28.07■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Pibf1E9Q6K3 756 aa28.06■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Cdkn1cP49919 348 aa28.06■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Esx1O88933 382 aa28.06■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 1700010I14RikQ7TPG0 532 aa28.05■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Cux1P53564 1515 aa28.05■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Ccdc30Q8BVF4 654 aa28.05■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 AknaQ80VW7 1404 aa28.05■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 CalrP14211 416 aaKnown RBP28.05■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Rufy1Q8BIJ7 712 aa28.05■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Mical1Q8VDP3 1048 aa28.05■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Dhx8A2A4P0 1244 aaKnown RBP28.04■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Ppp2r3aB2RXC8 1150 aa28.04■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Kif3cO35066 796 aa28.04■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Smc4Q8CG47 1286 aa28.03■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Polr3gQ6NXY9 223 aa28.02■■■□□ 2.08
Sh3rf1-201ENSMUST00000034060 Fez1Q8K0X8 392 aa28.01■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Tceal9Q9DD24 104 aa28.01■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Mns1Q61884 491 aa28.01■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 PdcQ9QW08 244 aa28■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Phactr2B1AVP0 632 aa28■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Chaf1aQ9QWF0 911 aa27.99■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Erc2Q6PH08 957 aa27.98■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Usp40Q8BWR4 1235 aa27.98■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Triml2E9PW10 424 aa27.98■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Txndc2Q6P902 515 aa27.98■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 KarsQ99MN1 595 aaKnown RBP27.98■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Gnai1B2RSH2 354 aa27.97■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Cplx1P63040 134 aa27.97■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Gnai3Q9DC51 354 aa27.97■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Kri1Q8VDQ9 704 aaKnown RBP27.97■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Ints3Q7TPD0 1041 aaKnown RBP27.97■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 Vps8Q0P5W1 1427 aa27.96■■■□□ 2.07
Sh3rf1-201ENSMUST00000034060 PnisrA2AJT4 805 aaKnown RBP27.95■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Ecm2Q5FW85 670 aa27.94■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Senp3Q9EP97 568 aaKnown RBP27.94■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Fam13bQ8K2H3 851 aa27.94■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Sart1Q9Z315 806 aaKnown RBP27.94■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Q9D2X8 372 aa27.94■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Ccdc171E9Q1U1 1324 aa27.93■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Chmp4cQ9D7F7 232 aa27.93■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 IbspQ61711 324 aa27.93■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 AnlnQ8K298 1121 aaKnown RBP27.93■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Washc2Q6PGL7 1334 aa27.93■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Rpgrip1lQ8CG73 1264 aa27.93■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Nop14Q8R3N1 860 aaKnown RBP27.93■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Utp14aQ640M1 767 aaKnown RBP27.92■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Smarca2Q6DIC0 1577 aa27.92■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 SkilQ60665 675 aa27.92■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 PogkQ80TC5 607 aa27.92■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 BccipQ9CWI3 316 aa27.92■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Psma5Q9Z2U1 241 aaKnown RBP27.91■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Wdr78E9PYY5 807 aa27.91■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Krt82Q99M74 516 aa27.9■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Kif20aP97329 887 aa27.9■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Ric3Q8BPM6 367 aa27.9■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Odf2A3KGV1 830 aaKnown RBP27.9■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Dctn1O08788 1281 aa27.89■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Sox12Q04890 314 aa27.89■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Dhx29Q6PGC1 1365 aaKnown RBP27.89■■■□□ 2.06
Sh3rf1-201ENSMUST00000034060 Zkscan1Q8BGS3 561 aaKnown RBP27.89■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Ap3b2Q9JME5 1082 aa27.88■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Cyp46a1Q9WVK8 500 aa27.88■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Nek4Q9Z1J2 792 aa27.88■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Cux2P70298 1426 aa27.87■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Necab1Q8BG18 352 aa27.87■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 AppP12023 770 aa27.86■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Tnpo1Q8BFY9 898 aaKnown RBP27.86■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Pank1Q8K4K6 548 aa27.86■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Swt1Q9DBQ9 907 aa27.86■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Cfap99A0A140LIX9 648 aa27.86■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Ppp1r18Q8BQ30 594 aa27.86■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Mad1l1Q9WTX8 717 aaKnown RBP27.86■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Sycp2Q9CUU3 1500 aa27.85■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Synj1Q8CHC4 1574 aa27.84■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 WrnO09053 1401 aa27.84■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Mrvi1Q9WUX5 899 aaKnown RBP27.83■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Arid3cA6PWV5 409 aa27.83■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Hoxa7P02830 229 aa27.83■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Rnf214Q8BFU3 668 aaKnown RBP27.83■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Def6Q8C2K1 630 aa27.83■■■□□ 2.05
Sh3rf1-201ENSMUST00000034060 Hmox1P14901 289 aa27.82■■■□□ 2.04
Sh3rf1-201ENSMUST00000034060 Hap1O35668 628 aa27.82■■■□□ 2.04
Sh3rf1-201ENSMUST00000034060 Rbm25B2RY56 838 aaKnown RBP27.81■■■□□ 2.04
Sh3rf1-201ENSMUST00000034060 Usp16Q99LG0 825 aa27.81■■■□□ 2.04
Sh3rf1-201ENSMUST00000034060 Zkscan2G3X952 960 aa27.81■■■□□ 2.04
Sh3rf1-201ENSMUST00000034060 Pak3Q61036 559 aa27.81■■■□□ 2.04
Sh3rf1-201ENSMUST00000034060 Ppm1eQ80TL0 749 aa27.81■■■□□ 2.04
Sh3rf1-201ENSMUST00000034060 Cc2d1aQ8K1A6 943 aa27.8■■■□□ 2.04
Retrieved 100 of 22,080 RNA–protein pairs in 26.9 ms