Protein–RNA interactions for Protein: A0A140LIX9

Cfap99, Cilia and flagella-associated protein 99, mousemouse

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cfap99A0A140LIX9 Gm25239-201ENSMUST00000174915 86 ntBASIC45,7■■■■■ 4,91
Cfap99A0A140LIX9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC42,39■■■■■ 4,38
Cfap99A0A140LIX9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC41,84■■■■■ 4,29
Cfap99A0A140LIX9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC39,77■■■■□ 3,96
Cfap99A0A140LIX9 Gm24109-201ENSMUST00000175489 103 ntBASIC39,72■■■■□ 3,95
Cfap99A0A140LIX9 Gm15042-201ENSMUST00000120212 883 ntBASIC39,66■■■■□ 3,94
Cfap99A0A140LIX9 Gm15045-201ENSMUST00000117359 883 ntBASIC38,68■■■■□ 3,78
Cfap99A0A140LIX9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC38,65■■■■□ 3,78
Cfap99A0A140LIX9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC38,63■■■■□ 3,77
Cfap99A0A140LIX9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC38,62■■■■□ 3,77
Cfap99A0A140LIX9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC38,6■■■■□ 3,77
Cfap99A0A140LIX9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC38,43■■■■□ 3,74
Cfap99A0A140LIX9 Gm23366-201ENSMUST00000175022 89 ntBASIC38,17■■■■□ 3,7
Cfap99A0A140LIX9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC37,95■■■■□ 3,67
Cfap99A0A140LIX9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC37,17■■■■□ 3,54
Cfap99A0A140LIX9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC37,06■■■■□ 3,52
Cfap99A0A140LIX9 Psd-208ENSMUST00000224556 2034 ntBASIC37■■■■□ 3,51
Cfap99A0A140LIX9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC36,91■■■■□ 3,5
Cfap99A0A140LIX9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC36,83■■■■□ 3,49
Cfap99A0A140LIX9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC36,81■■■■□ 3,48
Cfap99A0A140LIX9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC36,73■■■■□ 3,47
Cfap99A0A140LIX9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC36,69■■■■□ 3,46
Cfap99A0A140LIX9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC36,44■■■■□ 3,42
Cfap99A0A140LIX9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC36,32■■■■□ 3,4
Cfap99A0A140LIX9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC36,32■■■■□ 3,4
Cfap99A0A140LIX9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC36,26■■■■□ 3,4
Cfap99A0A140LIX9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC36,25■■■■□ 3,39
Cfap99A0A140LIX9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC36,18■■■■□ 3,38
Cfap99A0A140LIX9 Gm25238-201ENSMUST00000174914 89 ntBASIC36,16■■■■□ 3,38
Cfap99A0A140LIX9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC36,13■■■■□ 3,37
Cfap99A0A140LIX9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC36,07■■■■□ 3,36
Cfap99A0A140LIX9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC35,92■■■■□ 3,34
Cfap99A0A140LIX9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC35,75■■■■□ 3,31
Cfap99A0A140LIX9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC35,67■■■■□ 3,3
Cfap99A0A140LIX9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35,6■■■■□ 3,29
Cfap99A0A140LIX9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC35,57■■■■□ 3,28
Cfap99A0A140LIX9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC35,53■■■■□ 3,28
Cfap99A0A140LIX9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC35,49■■■■□ 3,27
Cfap99A0A140LIX9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC35,46■■■■□ 3,27
Cfap99A0A140LIX9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC35,43■■■■□ 3,26
Cfap99A0A140LIX9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC35,42■■■■□ 3,26
Cfap99A0A140LIX9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC35,29■■■■□ 3,24
Cfap99A0A140LIX9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC35,27■■■■□ 3,24
Cfap99A0A140LIX9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35,23■■■■□ 3,23
Cfap99A0A140LIX9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC35,14■■■■□ 3,22
Cfap99A0A140LIX9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC35,11■■■■□ 3,21
Cfap99A0A140LIX9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC35,05■■■■□ 3,2
Cfap99A0A140LIX9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC35,05■■■■□ 3,2
Cfap99A0A140LIX9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC34,87■■■■□ 3,17
Cfap99A0A140LIX9 Gm25262-201ENSMUST00000174934 133 ntBASIC34,85■■■■□ 3,17
Cfap99A0A140LIX9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC34,85■■■■□ 3,17
Cfap99A0A140LIX9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC34,77■■■■□ 3,16
Cfap99A0A140LIX9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC34,76■■■■□ 3,16
Cfap99A0A140LIX9 Gm27325-201ENSMUST00000175467 74 ntBASIC34,7■■■■□ 3,15
Cfap99A0A140LIX9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC34,58■■■■□ 3,13
Cfap99A0A140LIX9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34,43■■■■□ 3,1
Cfap99A0A140LIX9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC34,39■■■■□ 3,1
Cfap99A0A140LIX9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC34,37■■■■□ 3,09
Cfap99A0A140LIX9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC34,35■■■■□ 3,09
Cfap99A0A140LIX9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC34,34■■■■□ 3,09
Cfap99A0A140LIX9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC34,33■■■■□ 3,09
Cfap99A0A140LIX9 Rab21-202ENSMUST00000218831 843 ntBASIC34,29■■■■□ 3,08
Cfap99A0A140LIX9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC34,23■■■■□ 3,07
Cfap99A0A140LIX9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC34,22■■■■□ 3,07
Cfap99A0A140LIX9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC34,18■■■■□ 3,06
Cfap99A0A140LIX9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC34,18■■■■□ 3,06
Cfap99A0A140LIX9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC34,16■■■■□ 3,06
Cfap99A0A140LIX9 Gm26115-201ENSMUST00000175605 87 ntBASIC34,11■■■■□ 3,05
Cfap99A0A140LIX9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC34,07■■■■□ 3,05
Cfap99A0A140LIX9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC34,06■■■■□ 3,04
Cfap99A0A140LIX9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC34,03■■■■□ 3,04
Cfap99A0A140LIX9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC33,99■■■■□ 3,03
Cfap99A0A140LIX9 Gm10524-201ENSMUST00000181931 1893 ntBASIC33,95■■■■□ 3,02
Cfap99A0A140LIX9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC33,9■■■■□ 3,02
Cfap99A0A140LIX9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC33,89■■■■□ 3,02
Cfap99A0A140LIX9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC33,89■■■■□ 3,02
Cfap99A0A140LIX9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC33,88■■■■□ 3,01
Cfap99A0A140LIX9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC33,86■■■■□ 3,01
Cfap99A0A140LIX9 Gm8109-201ENSMUST00000194076 746 ntBASIC33,83■■■■□ 3,01
Cfap99A0A140LIX9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC33,82■■■■□ 3
Cfap99A0A140LIX9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC33,82■■■■□ 3
Cfap99A0A140LIX9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC33,81■■■■□ 3
Cfap99A0A140LIX9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC33,8■■■■□ 3
Cfap99A0A140LIX9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC33,79■■■■□ 3
Cfap99A0A140LIX9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC33,73■■■□□ 2,99
Cfap99A0A140LIX9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC33,66■■■□□ 2,98
Cfap99A0A140LIX9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC33,58■■■□□ 2,97
Cfap99A0A140LIX9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33,57■■■□□ 2,96
Cfap99A0A140LIX9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC33,56■■■□□ 2,96
Cfap99A0A140LIX9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC33,53■■■□□ 2,96
Cfap99A0A140LIX9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC33,53■■■□□ 2,96
Cfap99A0A140LIX9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33,45■■■□□ 2,94
Cfap99A0A140LIX9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33,44■■■□□ 2,94
Cfap99A0A140LIX9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC33,39■■■□□ 2,94
Cfap99A0A140LIX9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC33,33■■■□□ 2,93
Cfap99A0A140LIX9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC33,33■■■□□ 2,93
Cfap99A0A140LIX9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC33,32■■■□□ 2,92
Cfap99A0A140LIX9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC33,22■■■□□ 2,91
Cfap99A0A140LIX9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC33,18■■■□□ 2,9
Cfap99A0A140LIX9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC33,17■■■□□ 2,9
Retrieved 100 of 76,532 protein–RNA pairs in 11,5 ms