RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	RPB9	P27999	122 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	SRY1	P36007	326 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	YKR032W	P36127	104 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	YBR063C	P38083	404 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	ECM13	P38195	257 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	AVT2	P39981	480 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	YER076C	P40049	302 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	LSM4	P40070	187 aa	Known RBP	1.08	□□□□□ -2.24
VPS55	YJR044C	SOK1	P40317	901 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	YIL059C	P40520	121 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	YKE4	P40544	346 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	COS4	P43542	379 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	UFD1	P53044	361 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	TOS8	P53147	276 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	SMD1	Q02260	146 aa	Predicted RBP	1.08	□□□□□ -2.24
VPS55	YJR044C	AIM34	Q03673	198 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	GRH1	Q04410	372 aa	Known RBP	1.08	□□□□□ -2.24
VPS55	YJR044C	BRX1	Q08235	291 aa	Known RBP	1.08	□□□□□ -2.24
VPS55	YJR044C	YPR063C	Q12160	140 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	TIM22	Q12328	207 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	GEP5	Q12393	293 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	AGC1	Q12482	902 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	YOR1	P53049	1477 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	ADH1	P00330	348 aa	Known RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	RAD10	P06838	210 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	BET1	P22804	142 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	BUB2	P26448	306 aa	Predicted RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	UBC6	P33296	250 aa	Predicted RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	TKL2	P33315	681 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	YER121W	P40076	114 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	YER188W	P40103	239 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	ARC15	P40518	154 aa	RIP-Chip data	1.07	□□□□□ -2.24	not detected
VPS55	YJR044C	PFS2	P42841	465 aa	Known RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	FMP32	P43557	207 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	TMA22	P47089	198 aa	Predicted RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	PGU1	P47180	361 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	DSK2	P48510	373 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	MDM34	P53083	459 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	SYF2	P53277	215 aa	Predicted RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	ACT1	P60010	375 aa	Known RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	TMA20	P89886	181 aa	Predicted RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	LPP1	Q04396	274 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	SHH4	Q06236	168 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	NIP7	Q08962	181 aa	Known RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	YOR283W	Q12040	230 aa	Known RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	YPL162C	Q12042	273 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	YLR050C	Q12155	161 aa	Known RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	USB1	Q12208	290 aa	Known RBP	1.07	□□□□□ -2.24
VPS55	YJR044C	PRR2	Q12310	699 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	YBL112C	Q3E7Y4	105 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	PET20	Q99373	253 aa		1.07	□□□□□ -2.24
VPS55	YJR044C	MBF1	O14467	151 aa	Known RBP	1.06	□□□□□ -2.24
VPS55	YJR044C	RPL9A	P05738	191 aa	Known RBP	1.06	□□□□□ -2.24
VPS55	YJR044C	CDC7	P06243	507 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	SEC4	P07560	215 aa	Known RBP	1.06	□□□□□ -2.24
VPS55	YJR044C	URA5	P13298	226 aa	Known RBP	1.06	□□□□□ -2.24
VPS55	YJR044C	DPM1	P14020	267 aa	Known RBP	1.06	□□□□□ -2.24
VPS55	YJR044C	POP7	P38291	140 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	DER1	P38307	211 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	POP4	P38336	279 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	RPF1	P38805	295 aa	Known RBP	1.06	□□□□□ -2.24
VPS55	YJR044C	YHR125W	P38831	101 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	GIM4	P40005	111 aa	Known RBP	1.06	□□□□□ -2.24
VPS55	YJR044C	PRM10	P42946	383 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	OST2	P46964	130 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	GON7	P46984	123 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	RPL9B	P51401	191 aa	Known RBP	1.06	□□□□□ -2.24
VPS55	YJR044C	YGR026W	P53217	278 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	YNL184C	P53876	108 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	YNL140C	P53910	189 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	DGA1	Q08650	418 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	YLR053C	Q12026	108 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	RIO1	Q12196	484 aa	Known RBP	1.06	□□□□□ -2.24
VPS55	YJR044C	NOT5	Q12514	560 aa	Predicted RBP	1.06	□□□□□ -2.24
VPS55	YJR044C	YPL247C	Q12523	523 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	MHT1	Q12525	324 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	SAS5	Q99314	248 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	TAF2	P23255	1407 aa		1.06	□□□□□ -2.24
VPS55	YJR044C	YHR032W-A	P0C5N6	59 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	YLR156W	P0CE96	114 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	YLR159W	P0CE97	114 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	YLR161W	P0CE98	114 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	PBI2	P0CT04	75 aa	Known RBP	1.05	□□□□□ -2.24
VPS55	YJR044C	PET9	P18239	318 aa	Known RBP	1.05	□□□□□ -2.24
VPS55	YJR044C	MRPS28	P21771	286 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	PEX34	P25584	144 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	YCR090C	P25654	182 aa	Known RBP	1.05	□□□□□ -2.24
VPS55	YJR044C	KDX1	P36005	433 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	NVJ1	P38881	321 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	LSM1	P47017	172 aa	Known RBP	1.05	□□□□□ -2.24
VPS55	YJR044C	YGR050C	P53231	118 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	HST4	P53688	370 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	COG5	P53951	403 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	NUP49	Q02199	472 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	PET191	Q02772	108 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	HPT1	Q04178	221 aa	Known RBP	1.05	□□□□□ -2.24
VPS55	YJR044C	HNT1	Q04344	158 aa	Known RBP	1.05	□□□□□ -2.24
VPS55	YJR044C	YMR315W	Q04869	349 aa	Known RBP	1.05	□□□□□ -2.24
VPS55	YJR044C	DYN3	Q04949	312 aa		1.05	□□□□□ -2.24
VPS55	YJR044C	YOR342C	Q12182	319 aa		1.05	□□□□□ -2.24

Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms