Protein–RNA interactions for Protein: Q02260

SMD1, Small nuclear ribonucleoprotein Sm D1, yeastyeast

Predicted RBP Predictions only

Length 146 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SMD1Q02260 NSR1YGR159C 1245 nt14.01□□□□□ -0.17
SMD1Q02260 YML009W-BYML009W-B 477 nt13.68□□□□□ -0.22
SMD1Q02260 NOP1YDL014W 984 nt13.32□□□□□ -0.28
SMD1Q02260 MDJ1YFL016C 1536 nt12.53□□□□□ -0.4
SMD1Q02260 YKL036CYKL036C 393 nt11.95□□□□□ -0.5
SMD1Q02260 YJL027CYJL027C 417 nt11.64□□□□□ -0.55
SMD1Q02260 SRX1YKL086W 384 nt11.61□□□□□ -0.55
SMD1Q02260 Q0297Q0297 156 nt11.55□□□□□ -0.56
SMD1Q02260 DBP2YNL112W 1641 nt11.03□□□□□ -0.64
SMD1Q02260 YBR190WYBR190W 312 nt10.92□□□□□ -0.66
SMD1Q02260 YCR051WYCR051W 669 nt10.9□□□□□ -0.66
SMD1Q02260 SCS3YGL126W 1143 nt10.65□□□□□ -0.7
SMD1Q02260 TRN1tP(UGG)A 72 nt10.64□□□□□ -0.71
SMD1Q02260 SUF9tP(UGG)F 72 nt10.64□□□□□ -0.71
SMD1Q02260 SUF8tP(UGG)H 72 nt10.64□□□□□ -0.71
SMD1Q02260 tP(UGG)LtP(UGG)L 72 nt10.64□□□□□ -0.71
SMD1Q02260 SUF7tP(UGG)M 72 nt10.64□□□□□ -0.71
SMD1Q02260 tP(UGG)N1tP(UGG)N1 72 nt10.64□□□□□ -0.71
SMD1Q02260 tP(UGG)N2tP(UGG)N2 72 nt10.64□□□□□ -0.71
SMD1Q02260 tP(UGG)O1tP(UGG)O1 72 nt10.64□□□□□ -0.71
SMD1Q02260 SUF11tP(UGG)O2 72 nt10.64□□□□□ -0.71
SMD1Q02260 SSA3YBL075C 1950 nt10.59□□□□□ -0.71
SMD1Q02260 RTC3YHR087W 336 nt10.56□□□□□ -0.72
SMD1Q02260 CCC1YLR220W 969 nt10.44□□□□□ -0.74
SMD1Q02260 RVS167YDR388W 1449 nt10.38□□□□□ -0.75
SMD1Q02260 RPP1BYDL130W 321 nt10.33□□□□□ -0.76
SMD1Q02260 YOL085CYOL085C 342 nt10.33□□□□□ -0.76
SMD1Q02260 PKP1YIL042C 1185 nt10.11□□□□□ -0.79
SMD1Q02260 SCJ1YMR214W 1134 nt10.11□□□□□ -0.79
SMD1Q02260 PUT4YOR348C 1884 nt10.09□□□□□ -0.79
SMD1Q02260 tP(UGG)O3tP(UGG)O3 72 nt9.96□□□□□ -0.82
SMD1Q02260 SHR5YOL110W 714 nt9.93□□□□□ -0.82
SMD1Q02260 PET122YER153C 765 nt9.83□□□□□ -0.84
SMD1Q02260 ARE1YCR048W 1833 nt9.79□□□□□ -0.84
SMD1Q02260 URN1YPR152C 1398 nt9.79□□□□□ -0.84
SMD1Q02260 OPI9YLR338W 858 nt9.77□□□□□ -0.85
SMD1Q02260 SCR1SCR1 522 nt9.74□□□□□ -0.85
SMD1Q02260 YDJ1YNL064C 1230 nt9.71□□□□□ -0.86
SMD1Q02260 POA1YBR022W 534 nt9.7□□□□□ -0.86
SMD1Q02260 SAH1YER043C 1350 nt9.7□□□□□ -0.86
SMD1Q02260 RPN10YHR200W 807 nt9.67□□□□□ -0.86
SMD1Q02260 YHR049C-AYHR049C-A 297 nt9.63□□□□□ -0.87
SMD1Q02260 DEP1YAL013W 1218 nt9.61□□□□□ -0.87
SMD1Q02260 YNL208WYNL208W 600 nt9.57□□□□□ -0.88
SMD1Q02260 BSC6YOL137W 1494 nt9.55□□□□□ -0.88
SMD1Q02260 RRN5YLR141W 1092 nt9.55□□□□□ -0.88
SMD1Q02260 PUN1YLR414C 792 nt9.5□□□□□ -0.89
SMD1Q02260 ATS1YAL020C 1002 nt9.48□□□□□ -0.89
SMD1Q02260 SPT5YML010W 3192 nt9.42□□□□□ -0.9
SMD1Q02260 GAR1YHR089C 618 nt9.41□□□□□ -0.9
SMD1Q02260 RDN37-1RDN37-1 5354 nt9.4□□□□□ -0.9
SMD1Q02260 RDN37-2RDN37-2 5354 nt9.4□□□□□ -0.9
SMD1Q02260 YJL225CYJL225C 5277 nt9.38□□□□□ -0.91
SMD1Q02260 SSA1YAL005C 1929 nt9.37□□□□□ -0.91
SMD1Q02260 BUD23YCR047C 828 nt9.37□□□□□ -0.91
SMD1Q02260 YJR018WYJR018W 363 nt9.36□□□□□ -0.91
SMD1Q02260 PTC2YER089C 1395 nt9.36□□□□□ -0.91
SMD1Q02260 YER088W-BYER088W-B 147 nt9.35□□□□□ -0.91
SMD1Q02260 NAB2YGL122C 1578 nt9.35□□□□□ -0.91
SMD1Q02260 FPS1YLL043W 2010 nt9.33□□□□□ -0.92
SMD1Q02260 NVJ2YPR091C 2313 nt9.25□□□□□ -0.93
SMD1Q02260 RSB1YOR049C 1065 nt9.23□□□□□ -0.93
SMD1Q02260 PAC11YDR488C 1602 nt9.17□□□□□ -0.94
SMD1Q02260 TIR1YER011W 765 nt9.17□□□□□ -0.94
SMD1Q02260 SSA4YER103W 1929 nt9.17□□□□□ -0.94
SMD1Q02260 DAL1YIR027C 1383 nt9.14□□□□□ -0.95
SMD1Q02260 INM2YDR287W 879 nt9.13□□□□□ -0.95
SMD1Q02260 RPP2BYDR382W 333 nt9.12□□□□□ -0.95
SMD1Q02260 FIS1YIL065C 468 nt9.09□□□□□ -0.95
SMD1Q02260 YJR120WYJR120W 351 nt9.07□□□□□ -0.96
SMD1Q02260 MEP2YNL142W 1500 nt9.05□□□□□ -0.96
SMD1Q02260 FPR4YLR449W 1179 nt9.02□□□□□ -0.97
SMD1Q02260 PHO4YFR034C 939 nt9.01□□□□□ -0.97
SMD1Q02260 Q0182Q0182 405 nt9.01□□□□□ -0.97
SMD1Q02260 YPS1YLR120C 1710 nt8.99□□□□□ -0.97
SMD1Q02260 YBL100CYBL100C 315 nt8.91□□□□□ -0.98
SMD1Q02260 YDR095CYDR095C 411 nt8.88□□□□□ -0.99
SMD1Q02260 BDH2YAL061W 1254 nt8.88□□□□□ -0.99
SMD1Q02260 BDF1YLR399C 2061 nt8.88□□□□□ -0.99
SMD1Q02260 PST2YDR032C 597 nt8.86□□□□□ -0.99
SMD1Q02260 YHR165W-AYHR165W-A 312 nt8.86□□□□□ -0.99
SMD1Q02260 YMR090WYMR090W 684 nt8.82□□□□□ -1
SMD1Q02260 DCW1YKL046C 1350 nt8.81□□□□□ -1
SMD1Q02260 FUN26YAL022C 1554 nt8.79□□□□□ -1
SMD1Q02260 LSM3YLR438C-A 270 nt8.77□□□□□ -1.01
SMD1Q02260 TRM9YML014W 840 nt8.77□□□□□ -1.01
SMD1Q02260 EMI2YDR516C 1503 nt8.76□□□□□ -1.01
SMD1Q02260 SRB2YHR041C 633 nt8.76□□□□□ -1.01
SMD1Q02260 TAT1YBR069C 1860 nt8.76□□□□□ -1.01
SMD1Q02260 ALF1YNL148C 765 nt8.74□□□□□ -1.01
SMD1Q02260 RPP2AYOL039W 321 nt8.72□□□□□ -1.01
SMD1Q02260 YBR220CYBR220C 1683 nt8.71□□□□□ -1.02
SMD1Q02260 CCT6YDR188W 1641 nt8.7□□□□□ -1.02
SMD1Q02260 PTP1YDL230W 1008 nt8.68□□□□□ -1.02
SMD1Q02260 SUF2tP(AGG)C 72 nt8.68□□□□□ -1.02
SMD1Q02260 SUF10tP(AGG)N 72 nt8.68□□□□□ -1.02
SMD1Q02260 YDL221WYDL221W 552 nt8.67□□□□□ -1.02
SMD1Q02260 WWM1YFL010C 636 nt8.66□□□□□ -1.02
SMD1Q02260 SIS1YNL007C 1059 nt8.66□□□□□ -1.02
SMD1Q02260 SDH1YKL148C 1923 nt8.64□□□□□ -1.03
Retrieved 100 of 7,029 protein–RNA pairs in 14.8 ms