RNA–Protein interactions for RNA: YOR106W

VAM3, Transcript of Syntaxin-like vacuolar t-SNARE, yeastyeast

Gene VAM3, Length 852 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM3YOR106W SIR4P11978 1358 aa1.87□□□□□ -2.11
VAM3YOR106W MSW1P04803 379 aa1.87□□□□□ -2.11
VAM3YOR106W HOM6P31116 359 aaKnown RBP1.87□□□□□ -2.11
VAM3YOR106W MRX3P38172 270 aa1.87□□□□□ -2.11
VAM3YOR106W YAR1P46683 200 aa1.87□□□□□ -2.11
VAM3YOR106W SNZ2P53824 298 aa1.87□□□□□ -2.11
VAM3YOR106W USB1Q12208 290 aaKnown RBP1.87□□□□□ -2.11
VAM3YOR106W DDI2P0CH63 225 aa1.86□□□□□ -2.11
VAM3YOR106W DDI3P0CH64 225 aa1.86□□□□□ -2.11
VAM3YOR106W EHD3P28817 500 aa1.86□□□□□ -2.11
VAM3YOR106W YBR219CP38317 127 aa1.86□□□□□ -2.11
VAM3YOR106W GOS1P38736 223 aa1.86□□□□□ -2.11
VAM3YOR106W NEJ1Q06148 342 aa1.86□□□□□ -2.11
VAM3YOR106W ATG39Q06159 398 aa1.86□□□□□ -2.11
VAM3YOR106W YPR172WQ06608 200 aa1.86□□□□□ -2.11
VAM3YOR106W RRS1Q08746 203 aaKnown RBP1.86□□□□□ -2.11
VAM3YOR106W USE1P53146 245 aa1.85□□□□□ -2.11
VAM3YOR106W IPP1P00817 287 aaKnown RBP1.84□□□□□ -2.11
VAM3YOR106W SNA3P14359 133 aa1.84□□□□□ -2.11
VAM3YOR106W POL30P15873 258 aaKnown RBP1.84□□□□□ -2.11
VAM3YOR106W RNA15P25299 296 aaPredicted RBP1.84□□□□□ -2.11
VAM3YOR106W AVT2P39981 480 aa1.84□□□□□ -2.11
VAM3YOR106W YIL001WP40560 513 aa1.84□□□□□ -2.11
VAM3YOR106W BUD25P85052 153 aa1.84□□□□□ -2.11
VAM3YOR106W YBR096WP38256 230 aa1.83□□□□□ -2.12
VAM3YOR106W MEP1P40260 492 aa1.83□□□□□ -2.12
VAM3YOR106W MPP6P53725 186 aaPredicted RBP1.83□□□□□ -2.12
VAM3YOR106W YNR062CP53748 327 aa1.83□□□□□ -2.12
VAM3YOR106W RHO3Q00245 231 aaKnown RBP1.83□□□□□ -2.12
VAM3YOR106W HTL1Q9URQ5 78 aa1.83□□□□□ -2.12
VAM3YOR106W GRX2P17695 143 aaKnown RBP1.82□□□□□ -2.12
VAM3YOR106W YGL010WP25338 174 aa1.82□□□□□ -2.12
VAM3YOR106W YPT52P36018 234 aaKnown RBP1.82□□□□□ -2.12
VAM3YOR106W YAR068WP39564 161 aa1.82□□□□□ -2.12
VAM3YOR106W GLG2P47011 380 aa1.82□□□□□ -2.12
VAM3YOR106W NUP49Q02199 472 aa1.82□□□□□ -2.12
VAM3YOR106W MZM1Q03429 123 aaPredicted RBP1.82□□□□□ -2.12
VAM3YOR106W SNU23Q12368 194 aaPredicted RBP1.82□□□□□ -2.12
VAM3YOR106W YHR180WP38868 163 aa1.81□□□□□ -2.12
VAM3YOR106W AGE2P40529 298 aa1.81□□□□□ -2.12
VAM3YOR106W ARR2Q06597 130 aa1.81□□□□□ -2.12
VAM3YOR106W HEM25Q07534 307 aa1.81□□□□□ -2.12
VAM3YOR106W BTS1Q12051 335 aa1.81□□□□□ -2.12
VAM3YOR106W OM45P16547 393 aa1.8□□□□□ -2.12
VAM3YOR106W YJR056CP47115 236 aa1.8□□□□□ -2.12
VAM3YOR106W JHD2P47156 728 aaPredicted RBP1.8□□□□□ -2.12
VAM3YOR106W YCT1Q12235 531 aa1.8□□□□□ -2.12
VAM3YOR106W YBR220CP38318 560 aa1.79□□□□□ -2.12
VAM3YOR106W BIG1P38813 335 aa1.79□□□□□ -2.12
VAM3YOR106W BFR1P38934 470 aaKnown RBP RIP-Chip data1.79□□□□□ -2.12not detected
VAM3YOR106W GLE2P40066 365 aa1.79□□□□□ -2.12
VAM3YOR106W HAM1P47119 197 aaKnown RBP1.79□□□□□ -2.12
VAM3YOR106W YJR079WP47126 109 aa1.79□□□□□ -2.12
VAM3YOR106W YNL046WP53956 172 aa1.79□□□□□ -2.12
VAM3YOR106W SDO1Q07953 250 aaKnown RBP1.79□□□□□ -2.12
VAM3YOR106W CSI2Q08054 341 aa1.79□□□□□ -2.12
VAM3YOR106W YOR020W-AQ3E824 90 aa1.79□□□□□ -2.12
VAM3YOR106W FPR1P20081 114 aaKnown RBP1.78□□□□□ -2.12
VAM3YOR106W YHR127WP38833 243 aaKnown RBP1.78□□□□□ -2.12
VAM3YOR106W SML1Q04964 104 aa1.78□□□□□ -2.12
VAM3YOR106W CSM4Q08955 156 aa1.78□□□□□ -2.12
VAM3YOR106W PET9P18239 318 aaKnown RBP1.77□□□□□ -2.13
VAM3YOR106W SVP26P38869 228 aa1.77□□□□□ -2.13
VAM3YOR106W NIP7Q08962 181 aaKnown RBP1.77□□□□□ -2.13
VAM3YOR106W RPF1P38805 295 aaKnown RBP1.76□□□□□ -2.13
VAM3YOR106W ILM1P47155 203 aa1.76□□□□□ -2.13
VAM3YOR106W ERV29P53337 310 aa1.76□□□□□ -2.13
VAM3YOR106W TPO4Q12256 659 aa1.76□□□□□ -2.13
VAM3YOR106W FLO9P39712 1322 aa1.75□□□□□ -2.13
VAM3YOR106W MSF1P08425 469 aa1.75□□□□□ -2.13
VAM3YOR106W FCY2P17064 533 aa1.75□□□□□ -2.13
VAM3YOR106W RTT105P40063 208 aa1.75□□□□□ -2.13
VAM3YOR106W RPA43P46669 326 aa1.75□□□□□ -2.13
VAM3YOR106W TOS8P53147 276 aa1.75□□□□□ -2.13
VAM3YOR106W SEI1Q06058 285 aa1.75□□□□□ -2.13
VAM3YOR106W YLR162WQ06235 118 aa1.75□□□□□ -2.13
VAM3YOR106W RPL13BP40212 199 aaKnown RBP1.74□□□□□ -2.13
VAM3YOR106W RPL33BP41056 107 aaKnown RBP1.74□□□□□ -2.13
VAM3YOR106W SSQ1Q05931 657 aaPredicted RBP1.74□□□□□ -2.13
VAM3YOR106W RPL13AQ12690 199 aaPredicted RBP1.74□□□□□ -2.13
VAM3YOR106W RPL2AP0CX45 254 aaKnown RBP1.73□□□□□ -2.13
VAM3YOR106W RPL2BP0CX46 254 aaKnown RBP1.73□□□□□ -2.13
VAM3YOR106W ERD2P18414 219 aa1.73□□□□□ -2.13
VAM3YOR106W ECM33P38248 429 aaKnown RBP1.73□□□□□ -2.13
VAM3YOR106W YMR144WP40214 342 aaKnown RBP1.73□□□□□ -2.13
VAM3YOR106W CAT5P41735 233 aa1.73□□□□□ -2.13
VAM3YOR106W MSA1Q08471 629 aa1.73□□□□□ -2.13
VAM3YOR106W RSR1P13856 272 aa1.71□□□□□ -2.14
VAM3YOR106W YBR063CP38083 404 aa1.71□□□□□ -2.14
VAM3YOR106W RSM25P40496 264 aa1.71□□□□□ -2.14
VAM3YOR106W MSH5Q12175 901 aa1.71□□□□□ -2.14
VAM3YOR106W YOL107WQ12239 342 aa1.71□□□□□ -2.14
VAM3YOR106W CDC8P00572 216 aa1.7□□□□□ -2.14
VAM3YOR106W RPS5P26783 225 aaKnown RBP1.7□□□□□ -2.14
VAM3YOR106W TIR3P40552 269 aa1.7□□□□□ -2.14
VAM3YOR106W YML096WQ04489 525 aa1.7□□□□□ -2.14
VAM3YOR106W YLR126CQ12288 251 aa1.7□□□□□ -2.14
VAM3YOR106W UBR2Q07963 1872 aa1.69□□□□□ -2.14
VAM3YOR106W RIO1Q12196 484 aaKnown RBP1.69□□□□□ -2.14
VAM3YOR106W MEI4P29467 408 aa1.68□□□□□ -2.14
Retrieved 100 of 5,963 RNA–protein pairs in 36.1 ms