RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	KEI1	Q06346	221 aa		13.34	□□□□□ -0.27
CCC1	YLR220W	RFU1	Q08003	200 aa		13.34	□□□□□ -0.27
CCC1	YLR220W	SRL2	Q12020	392 aa		13.34	□□□□□ -0.27
CCC1	YLR220W	CHO1	P08456	276 aa		13.33	□□□□□ -0.28
CCC1	YLR220W	UMP1	P38293	148 aa		13.33	□□□□□ -0.28
CCC1	YLR220W	ARC40	P38328	384 aa	Known RBP	13.33	□□□□□ -0.28
CCC1	YLR220W	PRS3	P38689	320 aa	Known RBP	13.33	□□□□□ -0.28
CCC1	YLR220W	GPI14	P47088	403 aa	Known RBP	13.33	□□□□□ -0.28
CCC1	YLR220W	NSA1	P53136	463 aa	Predicted RBP	13.33	□□□□□ -0.28
CCC1	YLR220W	VHT1	P53241	593 aa		13.33	□□□□□ -0.28
CCC1	YLR220W	CYC1	P00044	109 aa	Predicted RBP	13.32	□□□□□ -0.28
CCC1	YLR220W	MSI1	P13712	422 aa		13.32	□□□□□ -0.28
CCC1	YLR220W	AIM20	P40451	204 aa		13.32	□□□□□ -0.28
CCC1	YLR220W	YIL060W	P40519	144 aa		13.32	□□□□□ -0.28
CCC1	YLR220W	UBC13	P52490	153 aa		13.32	□□□□□ -0.28
CCC1	YLR220W	TPN1	P53099	579 aa		13.32	□□□□□ -0.28
CCC1	YLR220W	CTF19	Q02732	369 aa		13.32	□□□□□ -0.28
CCC1	YLR220W	MRX9	Q07349	420 aa	Known RBP	13.32	□□□□□ -0.28
CCC1	YLR220W	GAT3	Q07928	141 aa		13.32	□□□□□ -0.28
CCC1	YLR220W	YPL199C	Q08954	240 aa		13.32	□□□□□ -0.28
CCC1	YLR220W	ARO4	P32449	370 aa	Known RBP	13.31	□□□□□ -0.28
CCC1	YLR220W	FAT1	P38225	669 aa		13.31	□□□□□ -0.28
CCC1	YLR220W	ARO9	P38840	513 aa	Predicted RBP	13.31	□□□□□ -0.28
CCC1	YLR220W	TYW3	P53177	273 aa		13.31	□□□□□ -0.28
CCC1	YLR220W	FMP48	P53233	369 aa		13.31	□□□□□ -0.28
CCC1	YLR220W	YKR005C	Q02203	525 aa		13.31	□□□□□ -0.28
CCC1	YLR220W	RSC58	Q07979	502 aa		13.31	□□□□□ -0.28
CCC1	YLR220W	NCE102	Q12207	173 aa	RIP-Chip data	13.31	□□□□□ -0.28	not detected
CCC1	YLR220W	CDC28	P00546	298 aa	Known RBP	13.3	□□□□□ -0.28
CCC1	YLR220W	SAG1	P20840	650 aa		13.3	□□□□□ -0.28
CCC1	YLR220W	YND1	P40009	630 aa		13.3	□□□□□ -0.28
CCC1	YLR220W	CRZ1	P53968	678 aa		13.3	□□□□□ -0.28
CCC1	YLR220W	YPR098C	Q06089	161 aa		13.3	□□□□□ -0.28
CCC1	YLR220W	RPL6B	P05739	176 aa	Known RBP	13.29	□□□□□ -0.28
CCC1	YLR220W	CAP2	P13517	287 aa		13.29	□□□□□ -0.28
CCC1	YLR220W	MRPL36	P36531	177 aa		13.29	□□□□□ -0.28
CCC1	YLR220W	HPA3	P39979	161 aa		13.29	□□□□□ -0.28
CCC1	YLR220W	YIL029C	P40538	142 aa		13.29	□□□□□ -0.28
CCC1	YLR220W	BXI1	P48558	297 aa		13.29	□□□□□ -0.28
CCC1	YLR220W	SKO1	Q02100	647 aa		13.29	□□□□□ -0.28
CCC1	YLR220W	YDC1	Q02896	317 aa		13.29	□□□□□ -0.28
CCC1	YLR220W	ARO8	P53090	500 aa	Known RBP	13.28	□□□□□ -0.28
CCC1	YLR220W	PEX10	Q05568	337 aa		13.28	□□□□□ -0.28
CCC1	YLR220W	PHO92	Q06390	306 aa		13.28	□□□□□ -0.28
CCC1	YLR220W	RPS23A	P0CX29	145 aa	Known RBP	13.27	□□□□□ -0.29
CCC1	YLR220W	RPS23B	P0CX30	145 aa		13.27	□□□□□ -0.29
CCC1	YLR220W	MTC7	P32633	139 aa		13.27	□□□□□ -0.29
CCC1	YLR220W	EGT2	P42835	1041 aa		13.27	□□□□□ -0.29
CCC1	YLR220W	YLR283W	Q05867	314 aa		13.27	□□□□□ -0.29
CCC1	YLR220W	ODC2	Q99297	307 aa		13.27	□□□□□ -0.29
CCC1	YLR220W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	13.26	□□□□□ -0.29	not detected
CCC1	YLR220W	ZUO1	P32527	433 aa	Known RBP	13.26	□□□□□ -0.29
CCC1	YLR220W	LSM7	P53905	115 aa	Known RBP	13.26	□□□□□ -0.29
CCC1	YLR220W	YMR279C	Q03263	540 aa		13.26	□□□□□ -0.29
CCC1	YLR220W	HNT1	Q04344	158 aa	Known RBP	13.26	□□□□□ -0.29
CCC1	YLR220W	YTH1	Q06102	208 aa	Predicted RBP	13.26	□□□□□ -0.29
CCC1	YLR220W	PML1	Q07930	204 aa	Predicted RBP	13.26	□□□□□ -0.29
CCC1	YLR220W	PET54	P10834	293 aa		13.25	□□□□□ -0.29
CCC1	YLR220W	DAL80	P26343	269 aa		13.25	□□□□□ -0.29
CCC1	YLR220W	HYM1	P32464	399 aa		13.25	□□□□□ -0.29
CCC1	YLR220W	SEC66	P33754	206 aa		13.25	□□□□□ -0.29
CCC1	YLR220W	CAT5	P41735	233 aa		13.25	□□□□□ -0.29
CCC1	YLR220W	HUT1	Q12520	339 aa		13.25	□□□□□ -0.29
CCC1	YLR220W	SPS4	P09937	338 aa		13.24	□□□□□ -0.29
CCC1	YLR220W	RPL3	P14126	387 aa	Known RBP	13.24	□□□□□ -0.29
CCC1	YLR220W	MSS1	P32559	526 aa	Predicted RBP	13.24	□□□□□ -0.29
CCC1	YLR220W	YOX1	P34161	385 aa		13.24	□□□□□ -0.29
CCC1	YLR220W	YKL187C	P34231	750 aa		13.24	□□□□□ -0.29
CCC1	YLR220W	SSN8	P47821	323 aa		13.24	□□□□□ -0.29
CCC1	YLR220W	SED1	Q01589	338 aa		13.24	□□□□□ -0.29
CCC1	YLR220W	URA6	P15700	204 aa		13.23	□□□□□ -0.29
CCC1	YLR220W	RFA3	P26755	122 aa	Known RBP	13.23	□□□□□ -0.29
CCC1	YLR220W	PEX4	P29340	183 aa		13.23	□□□□□ -0.29
CCC1	YLR220W	YER079W	P40052	210 aa	Known RBP	13.23	□□□□□ -0.29
CCC1	YLR220W	OTU1	P43558	301 aa		13.23	□□□□□ -0.29
CCC1	YLR220W	PIN3	Q06449	215 aa		13.23	□□□□□ -0.29
CCC1	YLR220W	GPM1	P00950	247 aa	Known RBP	13.22	□□□□□ -0.29
CCC1	YLR220W	VMA5	P31412	392 aa	Known RBP	13.22	□□□□□ -0.29
CCC1	YLR220W	YKL107W	P34251	309 aa		13.22	□□□□□ -0.29
CCC1	YLR220W	GAT2	P40209	560 aa		13.22	□□□□□ -0.29
CCC1	YLR220W	RPS0B	P46654	252 aa	Known RBP	13.22	□□□□□ -0.29
CCC1	YLR220W	YGR042W	P53227	271 aa		13.22	□□□□□ -0.29
CCC1	YLR220W	YDR248C	Q03786	193 aa		13.22	□□□□□ -0.29
CCC1	YLR220W	YBL029C-A	Q3E756	94 aa		13.22	□□□□□ -0.29
CCC1	YLR220W	RPS31	P05759	152 aa	Known RBP	13.21	□□□□□ -0.29
CCC1	YLR220W	HNM1	P19807	563 aa		13.21	□□□□□ -0.29
CCC1	YLR220W	NPL6	P32832	435 aa		13.21	□□□□□ -0.29
CCC1	YLR220W	VAM7	P32912	316 aa		13.21	□□□□□ -0.29
CCC1	YLR220W	YKL063C	P35725	167 aa		13.21	□□□□□ -0.29
CCC1	YLR220W	SHM2	P37291	469 aa	Known RBP	13.21	□□□□□ -0.29
CCC1	YLR220W	YHR122W	P38829	231 aa		13.21	□□□□□ -0.29
CCC1	YLR220W	GWT1	P47026	490 aa		13.21	□□□□□ -0.29
CCC1	YLR220W	SKP1	P52286	194 aa		13.21	□□□□□ -0.29
CCC1	YLR220W	UTP15	Q04305	513 aa	Known RBP	13.21	□□□□□ -0.29
CCC1	YLR220W	MID1	P41821	548 aa		13.2	□□□□□ -0.3
CCC1	YLR220W	UFD1	P53044	361 aa		13.2	□□□□□ -0.3
CCC1	YLR220W	FSH3	Q99369	266 aa		13.2	□□□□□ -0.3
CCC1	YLR220W	IFM1	P25038	676 aa		13.19	□□□□□ -0.3
CCC1	YLR220W	MNS1	P32906	549 aa		13.19	□□□□□ -0.3
CCC1	YLR220W	FLO10	P36170	1169 aa		13.19	□□□□□ -0.3

Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms