RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C CSI2Q08054 341 aa0.69□□□□□ -2.3
PCF11YDR228C PER33Q12144 273 aa0.69□□□□□ -2.3
PCF11YDR228C YPR011CQ12251 326 aa0.69□□□□□ -2.3
PCF11YDR228C ATO3Q12359 275 aa0.69□□□□□ -2.3
PCF11YDR228C FPR1P20081 114 aaKnown RBP0.68□□□□□ -2.3
PCF11YDR228C NUP57P48837 541 aa0.68□□□□□ -2.3
PCF11YDR228C YGR026WP53217 278 aa0.68□□□□□ -2.3
PCF11YDR228C ERV41Q04651 352 aa0.68□□□□□ -2.3
PCF11YDR228C SME1Q12330 94 aaPredicted RBP0.68□□□□□ -2.3
PCF11YDR228C UGA1P17649 471 aa0.67□□□□□ -2.3
PCF11YDR228C UPS2P35200 230 aa0.67□□□□□ -2.3
PCF11YDR228C YHR125WP38831 101 aa0.67□□□□□ -2.3
PCF11YDR228C OSW5P40219 148 aa0.67□□□□□ -2.3
PCF11YDR228C ERG25P53045 309 aa0.67□□□□□ -2.3
PCF11YDR228C YMR279CQ03263 540 aa0.67□□□□□ -2.3
PCF11YDR228C CYR1P08678 2026 aaKnown RBP0.67□□□□□ -2.3
PCF11YDR228C TRX1P22217 103 aaKnown RBP0.67□□□□□ -2.3
PCF11YDR228C HSM3P38348 480 aa0.67□□□□□ -2.3
PCF11YDR228C VTC1P40046 129 aaRIP-Chip data0.67□□□□□ -2.3not detected
PCF11YDR228C YKE4P40544 346 aa0.67□□□□□ -2.3
PCF11YDR228C PRM10P42946 383 aa0.67□□□□□ -2.3
PCF11YDR228C GCD14P46959 383 aaPredicted RBP0.67□□□□□ -2.3
PCF11YDR228C ARP5P53946 755 aa0.67□□□□□ -2.3
PCF11YDR228C BUD25P85052 153 aa0.67□□□□□ -2.3
PCF11YDR228C YLR162WQ06235 118 aa0.67□□□□□ -2.3
PCF11YDR228C YBL008W-AQ3E821 79 aa0.67□□□□□ -2.3
PCF11YDR228C YLR462WO13556 202 aa0.66□□□□□ -2.3
PCF11YDR228C OAC1P32332 324 aa0.66□□□□□ -2.3
PCF11YDR228C BLI1P35727 113 aa0.66□□□□□ -2.3
PCF11YDR228C YEL075CP39972 122 aa0.66□□□□□ -2.3
PCF11YDR228C YER189WP40104 122 aa0.66□□□□□ -2.3
PCF11YDR228C FMP33P46998 180 aa0.66□□□□□ -2.3
PCF11YDR228C YJR079WP47126 109 aa0.66□□□□□ -2.3
PCF11YDR228C USB1Q12208 290 aaKnown RBP0.66□□□□□ -2.3
PCF11YDR228C BBP1Q12365 385 aa0.66□□□□□ -2.3
PCF11YDR228C STH1P32597 1359 aa0.66□□□□□ -2.3
PCF11YDR228C MEK1P24719 497 aaPredicted RBP0.65□□□□□ -2.3
PCF11YDR228C ERV15P38312 142 aa0.65□□□□□ -2.3
PCF11YDR228C PEX18P38855 283 aa0.65□□□□□ -2.3
PCF11YDR228C DSN1P40568 576 aa0.65□□□□□ -2.3
PCF11YDR228C YGR219WP53307 113 aa0.65□□□□□ -2.3
PCF11YDR228C MAL13P53338 473 aa0.65□□□□□ -2.3
PCF11YDR228C REX3Q12090 404 aa0.65□□□□□ -2.3
PCF11YDR228C SVP26P38869 228 aa0.65□□□□□ -2.31
PCF11YDR228C RPL13BP40212 199 aaKnown RBP0.65□□□□□ -2.31
PCF11YDR228C PNC1P53184 216 aaKnown RBP0.65□□□□□ -2.31
PCF11YDR228C FAR8Q05040 523 aa0.65□□□□□ -2.31
PCF11YDR228C RPL13AQ12690 199 aaPredicted RBP0.65□□□□□ -2.31
PCF11YDR228C YSR3P23501 404 aa0.64□□□□□ -2.31
PCF11YDR228C SNF8Q12483 233 aa0.64□□□□□ -2.31
PCF11YDR228C SIR4P11978 1358 aa0.64□□□□□ -2.31
PCF11YDR228C SSH1P38353 490 aaKnown RBP0.63□□□□□ -2.31
PCF11YDR228C NEJ1Q06148 342 aa0.63□□□□□ -2.31
PCF11YDR228C ARR2Q06597 130 aa0.63□□□□□ -2.31
PCF11YDR228C RIO1Q12196 484 aaKnown RBP0.63□□□□□ -2.31
PCF11YDR228C GRX2P17695 143 aaKnown RBP0.63□□□□□ -2.31
PCF11YDR228C EHD3P28817 500 aa0.63□□□□□ -2.31
PCF11YDR228C MRH4P53166 561 aa0.63□□□□□ -2.31
PCF11YDR228C CPA1P07258 411 aaKnown RBP0.62□□□□□ -2.31
PCF11YDR228C MSA2P36157 363 aa0.62□□□□□ -2.31
PCF11YDR228C MRX5P47007 382 aa0.62□□□□□ -2.31
PCF11YDR228C YDR124WQ04608 324 aa0.62□□□□□ -2.31
PCF11YDR228C SML1Q04964 104 aa0.62□□□□□ -2.31
PCF11YDR228C YLR030WQ07967 263 aa0.62□□□□□ -2.31
PCF11YDR228C KRR1P25586 316 aaPredicted RBP0.61□□□□□ -2.31
PCF11YDR228C YHR180WP38868 163 aa0.61□□□□□ -2.31
PCF11YDR228C THO1P40040 218 aaKnown RBP0.61□□□□□ -2.31
PCF11YDR228C AGE2P40529 298 aa0.61□□□□□ -2.31
PCF11YDR228C TOS8P53147 276 aa0.61□□□□□ -2.31
PCF11YDR228C YLR179CQ06252 201 aaKnown RBP0.61□□□□□ -2.31
PCF11YDR228C MDY2Q12285 212 aa0.61□□□□□ -2.31
PCF11YDR228C SWI1P09547 1314 aa0.61□□□□□ -2.31
PCF11YDR228C RPL9AP05738 191 aaKnown RBP0.61□□□□□ -2.31
PCF11YDR228C TCD1P38756 429 aa0.61□□□□□ -2.31
PCF11YDR228C RPL9BP51401 191 aaKnown RBP0.61□□□□□ -2.31
PCF11YDR228C YGL159WP53110 370 aa0.61□□□□□ -2.31
PCF11YDR228C GTR2P53290 341 aa0.61□□□□□ -2.31
PCF11YDR228C YNR062CP53748 327 aa0.61□□□□□ -2.31
PCF11YDR228C SPP2Q02521 185 aa0.61□□□□□ -2.31
PCF11YDR228C SYC1Q08553 188 aaPredicted RBP0.61□□□□□ -2.31
PCF11YDR228C FMP16Q12497 93 aa0.61□□□□□ -2.31
PCF11YDR228C VAR1P02381 398 aa0.6□□□□□ -2.31
PCF11YDR228C PET9P18239 318 aaKnown RBP0.6□□□□□ -2.31
PCF11YDR228C MET16P18408 261 aaPredicted RBP0.6□□□□□ -2.31
PCF11YDR228C VMA11P32842 164 aa0.6□□□□□ -2.31
PCF11YDR228C DDI1P40087 428 aa0.6□□□□□ -2.31
PCF11YDR228C YIL001WP40560 513 aa0.6□□□□□ -2.31
PCF11YDR228C COQ10Q08058 207 aa0.6□□□□□ -2.31
PCF11YDR228C MSW1P04803 379 aa0.59□□□□□ -2.31
PCF11YDR228C ERG24P32462 438 aaKnown RBP0.59□□□□□ -2.31
PCF11YDR228C COA1P40452 197 aa0.59□□□□□ -2.31
PCF11YDR228C GMC2Q06201 188 aa0.59□□□□□ -2.31
PCF11YDR228C YPL119C-AQ3E751 87 aa0.59□□□□□ -2.31
PCF11YDR228C DBP3P20447 523 aaKnown RBP0.58□□□□□ -2.32
PCF11YDR228C QRI5P32344 111 aa0.58□□□□□ -2.32
PCF11YDR228C KDX1P36005 433 aa0.58□□□□□ -2.32
PCF11YDR228C YKL070WP36087 169 aa0.58□□□□□ -2.32
PCF11YDR228C FZO1P38297 855 aa0.58□□□□□ -2.32
PCF11YDR228C YJR012CP47087 207 aa0.58□□□□□ -2.32
PCF11YDR228C YPR172WQ06608 200 aa0.58□□□□□ -2.32
Retrieved 100 of 5,963 RNA–protein pairs in 23.3 ms