RNA–Protein interactions for RNA: YDR254W

CHL4, Transcript of Outer kinetochore protein required for chromosome stability, yeast

Gene CHL4, Length 1,377 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CHL4	YDR254W	SLM6	P38343	150 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	NVJ1	P38881	321 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	MAM33	P40513	266 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	AZF1	P41696	914 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	HMS2	P47175	358 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	ORM1	P53224	222 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	BUD32	P53323	261 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	SAE3	P89114	91 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	YMR166C	Q03829	368 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	YDL009C	Q12210	107 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	SUT2	Q12286	268 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	NCA2	Q12374	616 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	PEX11	Q12462	236 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	RIB3	Q99258	208 aa		5.2	□□□□□ -1.58
CHL4	YDR254W	TSC11	P40061	1430 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	TFS1	P14306	219 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	RPL16B	P26785	198 aa	Known RBP	5.19	□□□□□ -1.58
CHL4	YDR254W	SAC1	P32368	623 aa	Known RBP	5.19	□□□□□ -1.58
CHL4	YDR254W	UTR4	P32626	227 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	YBR096W	P38256	230 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	SDS24	P38314	527 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	CPR7	P47103	393 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	MUP1	P50276	574 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	SMM1	P53720	384 aa	Known RBP	5.19	□□□□□ -1.58
CHL4	YDR254W	COS1	P53822	381 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	IMP4	P53941	290 aa	Known RBP	5.19	□□□□□ -1.58
CHL4	YDR254W	TIM8	P57744	87 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	YDR249C	Q03787	373 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	RAV2	Q03956	351 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	PRP11	Q07350	266 aa	Predicted RBP	5.19	□□□□□ -1.58
CHL4	YDR254W	YLR030W	Q07967	263 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	TAF10	Q12030	206 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	YLR126C	Q12288	251 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	YOP1	Q12402	180 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	BI3	Q9ZZW7	517 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	TRM732	Q03496	1420 aa		5.19	□□□□□ -1.58
CHL4	YDR254W	MRP2	P10663	115 aa	Predicted RBP	5.18	□□□□□ -1.58
CHL4	YDR254W	SAM2	P19358	384 aa	Known RBP	5.18	□□□□□ -1.58
CHL4	YDR254W	MRPS28	P21771	286 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	ARO7	P32178	256 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	MRPL3	P36516	390 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	YBR137W	P38276	179 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	YBR285W	P38354	144 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	GLE2	P40066	365 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	YGR017W	P53210	297 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	YPR098C	Q06089	161 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	YOL024W	Q08172	172 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	YLR046C	Q12253	270 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	YOR214C	Q12282	236 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	ERV2	Q12284	196 aa		5.18	□□□□□ -1.58
CHL4	YDR254W	DET1	Q99288	334 aa	Known RBP	5.18	□□□□□ -1.58
CHL4	YDR254W	ROT2	P38138	954 aa		5.17	□□□□□ -1.58
CHL4	YDR254W	LSM4	P40070	187 aa	Known RBP	5.17	□□□□□ -1.58
CHL4	YDR254W	YMR144W	P40214	342 aa	Known RBP	5.17	□□□□□ -1.58
CHL4	YDR254W	PDS1	P40316	373 aa	Predicted RBP	5.17	□□□□□ -1.58
CHL4	YDR254W	RFC2	P40348	353 aa		5.17	□□□□□ -1.58
CHL4	YDR254W	PGD1	P40356	397 aa		5.17	□□□□□ -1.58
CHL4	YDR254W	PSA1	P41940	361 aa	Known RBP	5.17	□□□□□ -1.58
CHL4	YDR254W	PCP1	P53259	346 aa		5.17	□□□□□ -1.58
CHL4	YDR254W	TRM44	Q02648	567 aa	Known RBP	5.17	□□□□□ -1.58
CHL4	YDR254W	YDR476C	Q03362	224 aa		5.17	□□□□□ -1.58
CHL4	YDR254W	YDR278C	Q05612	105 aa		5.17	□□□□□ -1.58
CHL4	YDR254W	YOL073C	Q08232	322 aa		5.17	□□□□□ -1.58
CHL4	YDR254W	MMT2	Q08970	484 aa		5.17	□□□□□ -1.58
CHL4	YDR254W	MRX4	Q12467	430 aa		5.17	□□□□□ -1.58
CHL4	YDR254W	IGO2	Q9P305	131 aa		5.17	□□□□□ -1.58
CHL4	YDR254W	SUC2	P00724	532 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	BAR1	P12630	587 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	RPS1B	P23248	255 aa	Known RBP	5.16	□□□□□ -1.58
CHL4	YDR254W	SCO1	P23833	295 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	CLB2	P24869	491 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	UGX2	P32772	223 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	SPT4	P32914	102 aa	Predicted RBP	5.16	□□□□□ -1.58
CHL4	YDR254W	MCR1	P36060	302 aa	Known RBP	5.16	□□□□□ -1.58
CHL4	YDR254W	MRPL24	P36525	258 aa	Predicted RBP	5.16	□□□□□ -1.58
CHL4	YDR254W	FAR7	P43592	221 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	BOR1	P53838	576 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	YNL040W	P53960	456 aa	Predicted RBP	5.16	□□□□□ -1.58
CHL4	YDR254W	TRS23	Q03784	219 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	YLR049C	Q12110	428 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	UTP23	Q12339	254 aa	Known RBP	5.16	□□□□□ -1.58
CHL4	YDR254W	YPR064W	Q12492	139 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	YPL119C-A	Q3E751	87 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	TY1B-H	O13535	1793 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	CBP6	P07253	162 aa	Predicted RBP	5.16	□□□□□ -1.58
CHL4	YDR254W	PET9	P18239	318 aa	Known RBP	5.16	□□□□□ -1.58
CHL4	YDR254W	ERG4	P25340	473 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	RSA4	P25382	515 aa	Known RBP	5.16	□□□□□ -1.58
CHL4	YDR254W	CPR3	P25719	182 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	OAC1	P32332	324 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	PHD1	P36093	366 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	SCO2	P38072	301 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	ARC40	P38328	384 aa	Known RBP	5.16	□□□□□ -1.58
CHL4	YDR254W	YPT35	P38815	214 aa	Known RBP	5.16	□□□□□ -1.58
CHL4	YDR254W	MDM31	P38880	579 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	LYS1	P38998	373 aa	RIP-Chip data	5.16	□□□□□ -1.58	not detected
CHL4	YDR254W	EXO1	P39875	702 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	GLC8	P41818	229 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	MOB2	P43563	287 aa		5.16	□□□□□ -1.58
CHL4	YDR254W	PMT4	P46971	762 aa		5.16	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 115.2 ms