RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W PER33Q12144 273 aa0.33□□□□□ -2.36
PRP42YDR235W MHT1Q12525 324 aa0.33□□□□□ -2.36
PRP42YDR235W SAS5Q99314 248 aa0.33□□□□□ -2.36
PRP42YDR235W COS2P0CX12 379 aa0.32□□□□□ -2.36
PRP42YDR235W COS3P0CX13 379 aa0.32□□□□□ -2.36
PRP42YDR235W OPI1P21957 404 aa0.32□□□□□ -2.36
PRP42YDR235W YSR3P23501 404 aa0.32□□□□□ -2.36
PRP42YDR235W PPH21P23594 369 aa0.32□□□□□ -2.36
PRP42YDR235W CWP1P28319 239 aa0.32□□□□□ -2.36
PRP42YDR235W HEK2P38199 381 aaKnown RBP RIP-Chip data0.32□□□□□ -2.36not detected
PRP42YDR235W YHL049CP38722 271 aa0.32□□□□□ -2.36
PRP42YDR235W AYR1P40471 297 aa0.32□□□□□ -2.36
PRP42YDR235W SER33P40510 469 aa0.32□□□□□ -2.36
PRP42YDR235W TRM44Q02648 567 aaKnown RBP0.32□□□□□ -2.36
PRP42YDR235W PRM15Q03262 622 aa0.32□□□□□ -2.36
PRP42YDR235W ATC1Q04005 294 aa0.32□□□□□ -2.36
PRP42YDR235W VBA1Q04301 562 aa0.32□□□□□ -2.36
PRP42YDR235W EMI1Q04406 187 aa0.32□□□□□ -2.36
PRP42YDR235W REX3Q12090 404 aa0.32□□□□□ -2.36
PRP42YDR235W YOS9Q99220 542 aa0.32□□□□□ -2.36
PRP42YDR235W AI5_BETAQ9ZZX0 354 aa0.32□□□□□ -2.36
PRP42YDR235W RPC40P07703 335 aaKnown RBP0.31□□□□□ -2.36
PRP42YDR235W TPM1P17536 199 aaKnown RBP0.31□□□□□ -2.36
PRP42YDR235W UGA1P17649 471 aa0.31□□□□□ -2.36
PRP42YDR235W CCA1P21269 546 aa0.31□□□□□ -2.36
PRP42YDR235W POF1P25576 258 aa0.31□□□□□ -2.36
PRP42YDR235W ECM13P38195 257 aa0.31□□□□□ -2.36
PRP42YDR235W VPS45P38932 577 aa0.31□□□□□ -2.36
PRP42YDR235W SHC1P39000 512 aa0.31□□□□□ -2.36
PRP42YDR235W PRM9P39551 298 aa0.31□□□□□ -2.36
PRP42YDR235W PEP8P40335 379 aa0.31□□□□□ -2.36
PRP42YDR235W OST2P46964 130 aa0.31□□□□□ -2.36
PRP42YDR235W NBP35P52920 328 aa0.31□□□□□ -2.36
PRP42YDR235W PNC1P53184 216 aaKnown RBP0.31□□□□□ -2.36
PRP42YDR235W YNL260CP53846 198 aa0.31□□□□□ -2.36
PRP42YDR235W AAH1P53909 347 aa0.31□□□□□ -2.36
PRP42YDR235W YNL050CP53952 270 aa0.31□□□□□ -2.36
PRP42YDR235W SPO19Q03029 223 aa0.31□□□□□ -2.36
PRP42YDR235W PEX10Q05568 337 aa0.31□□□□□ -2.36
PRP42YDR235W BCP1Q06338 283 aa0.31□□□□□ -2.36
PRP42YDR235W ARV1Q06541 321 aa0.31□□□□□ -2.36
PRP42YDR235W YPR011CQ12251 326 aa0.31□□□□□ -2.36
PRP42YDR235W MDY2Q12285 212 aa0.31□□□□□ -2.36
PRP42YDR235W RPP0P05317 312 aaKnown RBP0.31□□□□□ -2.36
PRP42YDR235W CDC7P06243 507 aa0.31□□□□□ -2.36
PRP42YDR235W SGA1P08019 549 aa0.31□□□□□ -2.36
PRP42YDR235W YHR032W-AP0C5N6 59 aa0.31□□□□□ -2.36
PRP42YDR235W YOL162WP0CF19 215 aa0.31□□□□□ -2.36
PRP42YDR235W FRS2P15625 503 aaKnown RBP0.31□□□□□ -2.36
PRP42YDR235W HSM3P38348 480 aa0.31□□□□□ -2.36
PRP42YDR235W SSH1P38353 490 aaKnown RBP0.31□□□□□ -2.36
PRP42YDR235W YHB1P39676 399 aaKnown RBP0.31□□□□□ -2.36
PRP42YDR235W LOC1P43586 204 aaPredicted RBP0.31□□□□□ -2.36
PRP42YDR235W MRX5P47007 382 aa0.31□□□□□ -2.36
PRP42YDR235W YGL185CP53100 379 aa0.31□□□□□ -2.36
PRP42YDR235W MNT4P53745 580 aa0.31□□□□□ -2.36
PRP42YDR235W SWS2P53937 143 aa0.31□□□□□ -2.36
PRP42YDR235W CDC14Q00684 551 aa0.31□□□□□ -2.36
PRP42YDR235W RSM10Q03201 203 aa0.31□□□□□ -2.36
PRP42YDR235W CTR3Q06686 241 aa0.31□□□□□ -2.36
PRP42YDR235W ATO3Q12359 275 aa0.31□□□□□ -2.36
PRP42YDR235W BBP1Q12365 385 aa0.31□□□□□ -2.36
PRP42YDR235W YBL008W-AQ3E821 79 aa0.31□□□□□ -2.36
PRP42YDR235W RAS2P01120 322 aaKnown RBP0.3□□□□□ -2.36
PRP42YDR235W POX1P13711 748 aa0.3□□□□□ -2.36
PRP42YDR235W FBA1P14540 359 aaKnown RBP0.3□□□□□ -2.36
PRP42YDR235W SEC22P22214 214 aa0.3□□□□□ -2.36
PRP42YDR235W MEK1P24719 497 aaPredicted RBP0.3□□□□□ -2.36
PRP42YDR235W KRR1P25586 316 aaPredicted RBP0.3□□□□□ -2.36
PRP42YDR235W SKI2P35207 1287 aaKnown RBP RIP-Chip data0.3□□□□□ -2.36not detected
PRP42YDR235W RCN1P36054 211 aa0.3□□□□□ -2.36
PRP42YDR235W YKR045CP36138 183 aa0.3□□□□□ -2.36
PRP42YDR235W PRS4P38063 326 aaPredicted RBP0.3□□□□□ -2.36
PRP42YDR235W ARC15P40518 154 aaRIP-Chip data0.3□□□□□ -2.36not detected
PRP42YDR235W GCD14P46959 383 aaPredicted RBP0.3□□□□□ -2.36
PRP42YDR235W CIS3P47001 227 aa0.3□□□□□ -2.36
PRP42YDR235W ARP5P53946 755 aa0.3□□□□□ -2.36
PRP42YDR235W ASI3P53983 676 aa0.3□□□□□ -2.36
PRP42YDR235W DAD3P69850 94 aa0.3□□□□□ -2.36
PRP42YDR235W SPP2Q02521 185 aa0.3□□□□□ -2.36
PRP42YDR235W ERV41Q04651 352 aa0.3□□□□□ -2.36
PRP42YDR235W YLR179CQ06252 201 aaKnown RBP0.3□□□□□ -2.36
PRP42YDR235W MRPL23Q12487 163 aaPredicted RBP0.3□□□□□ -2.36
PRP42YDR235W STH1P32597 1359 aa0.29□□□□□ -2.36
PRP42YDR235W Q0255P03881 472 aa0.29□□□□□ -2.36
PRP42YDR235W MET16P18408 261 aaPredicted RBP0.29□□□□□ -2.36
PRP42YDR235W SCL1P21243 252 aaKnown RBP0.29□□□□□ -2.36
PRP42YDR235W PEX4P29340 183 aa0.29□□□□□ -2.36
PRP42YDR235W VMA11P32842 164 aa0.29□□□□□ -2.36
PRP42YDR235W COS8P38723 381 aa0.29□□□□□ -2.36
PRP42YDR235W YHR125WP38831 101 aa0.29□□□□□ -2.36
PRP42YDR235W VTC1P40046 129 aaRIP-Chip data0.29□□□□□ -2.36 RIP-Chip
PRP42YDR235W BMT5P40493 336 aa0.29□□□□□ -2.36
PRP42YDR235W PRM10P42946 383 aa0.29□□□□□ -2.36
PRP42YDR235W SMD3P43321 101 aaKnown RBP0.29□□□□□ -2.36
PRP42YDR235W FMP33P46998 180 aa0.29□□□□□ -2.36
PRP42YDR235W YJR012CP47087 207 aa0.29□□□□□ -2.36
PRP42YDR235W ERG25P53045 309 aa0.29□□□□□ -2.36
PRP42YDR235W YGR026WP53217 278 aa0.29□□□□□ -2.36
PRP42YDR235W LSB1P53281 241 aa0.29□□□□□ -2.36
Retrieved 100 of 5,963 RNA–protein pairs in 112.4 ms