RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C ATG7P38862 630 aa4.43□□□□□ -1.7
NUP116YMR047C FET3P38993 636 aa4.43□□□□□ -1.7
NUP116YMR047C YEL020CP39994 560 aa4.43□□□□□ -1.7
NUP116YMR047C FMP52P40008 231 aa4.43□□□□□ -1.7
NUP116YMR047C MGS1P40151 587 aa4.43□□□□□ -1.7
NUP116YMR047C LAS21P40367 830 aa4.43□□□□□ -1.7
NUP116YMR047C RPL9BP51401 191 aaKnown RBP4.43□□□□□ -1.7
NUP116YMR047C GTF1P53260 183 aaPredicted RBP4.43□□□□□ -1.7
NUP116YMR047C YDR209CQ03480 137 aa4.43□□□□□ -1.7
NUP116YMR047C GMC1Q04399 608 aa4.43□□□□□ -1.7
NUP116YMR047C HNT3Q08702 217 aa4.43□□□□□ -1.7
NUP116YMR047C YPL257WQ08974 193 aa4.43□□□□□ -1.7
NUP116YMR047C YOR304C-AO14468 76 aa4.43□□□□□ -1.7
NUP116YMR047C FLP1P03870 423 aa4.43□□□□□ -1.7
NUP116YMR047C COS8P38723 381 aa4.43□□□□□ -1.7
NUP116YMR047C SHO1P40073 367 aa4.43□□□□□ -1.7
NUP116YMR047C CDC40P40968 455 aaPredicted RBP4.43□□□□□ -1.7
NUP116YMR047C CGI121Q03705 181 aaKnown RBP4.43□□□□□ -1.7
NUP116YMR047C YET2Q04210 160 aa4.43□□□□□ -1.7
NUP116YMR047C YOP1Q12402 180 aa4.43□□□□□ -1.7
NUP116YMR047C YBR056W-AI2HB52 66 aa4.43□□□□□ -1.7
NUP116YMR047C RPB5P20434 215 aa4.43□□□□□ -1.7
NUP116YMR047C RPB10P22139 70 aa4.43□□□□□ -1.7
NUP116YMR047C NRP1P32770 719 aaKnown RBP RIP-Chip data4.43□□□□□ -1.7not detected
NUP116YMR047C SSS1P35179 80 aa4.43□□□□□ -1.7
NUP116YMR047C TCM62P38228 572 aaKnown RBP4.43□□□□□ -1.7
NUP116YMR047C TRR2P38816 342 aa4.43□□□□□ -1.7
NUP116YMR047C COG3P40094 801 aa4.43□□□□□ -1.7
NUP116YMR047C HXT9P40885 567 aa4.43□□□□□ -1.7
NUP116YMR047C YGR201CP42936 225 aa4.43□□□□□ -1.7
NUP116YMR047C FAR3P46671 204 aa4.43□□□□□ -1.7
NUP116YMR047C YSA1Q01976 231 aa4.43□□□□□ -1.7
NUP116YMR047C ODC1Q03028 310 aa4.43□□□□□ -1.7
NUP116YMR047C FMN1Q03778 218 aa4.43□□□□□ -1.7
NUP116YMR047C TVP18Q04767 167 aa4.43□□□□□ -1.7
NUP116YMR047C YPR174CQ06616 221 aaPredicted RBP4.43□□□□□ -1.7
NUP116YMR047C PUN1Q06991 263 aa4.43□□□□□ -1.7
NUP116YMR047C YLR049CQ12110 428 aa4.43□□□□□ -1.7
NUP116YMR047C TPO4Q12256 659 aa4.43□□□□□ -1.7
NUP116YMR047C JLP1Q12358 412 aa4.43□□□□□ -1.7
NUP116YMR047C MRX4Q12467 430 aa4.43□□□□□ -1.7
NUP116YMR047C CSF1Q12150 2958 aa4.42□□□□□ -1.7
NUP116YMR047C SPO7P18410 259 aa4.42□□□□□ -1.7
NUP116YMR047C EXO70P19658 623 aa4.42□□□□□ -1.7
NUP116YMR047C CHA1P25379 360 aaKnown RBP4.42□□□□□ -1.7
NUP116YMR047C PTC6P25646 442 aa4.42□□□□□ -1.7
NUP116YMR047C CAT2P32796 670 aaKnown RBP4.42□□□□□ -1.7
NUP116YMR047C MSN2P33748 704 aa4.42□□□□□ -1.7
NUP116YMR047C SRY1P36007 326 aa4.42□□□□□ -1.7
NUP116YMR047C BDH1P39714 382 aa4.42□□□□□ -1.7
NUP116YMR047C SMB1P40018 196 aaKnown RBP4.42□□□□□ -1.7
NUP116YMR047C LSM4P40070 187 aaKnown RBP4.42□□□□□ -1.7
NUP116YMR047C SOL1P50278 321 aa4.42□□□□□ -1.7
NUP116YMR047C STD1Q02794 444 aa4.42□□□□□ -1.7
NUP116YMR047C EFR3Q03653 782 aaKnown RBP4.42□□□□□ -1.7
NUP116YMR047C AIM36Q03798 255 aa4.42□□□□□ -1.7
NUP116YMR047C SDH3P33421 198 aa4.42□□□□□ -1.7
NUP116YMR047C YOX1P34161 385 aa4.42□□□□□ -1.7
NUP116YMR047C YKR073CP36153 106 aa4.42□□□□□ -1.7
NUP116YMR047C TRS20P38334 175 aa4.42□□□□□ -1.7
NUP116YMR047C AIM46P38885 310 aa4.42□□□□□ -1.7
NUP116YMR047C QDR1P40475 563 aa4.42□□□□□ -1.7
NUP116YMR047C SHR5P41912 237 aa4.42□□□□□ -1.7
NUP116YMR047C YJL163CP46996 555 aa4.42□□□□□ -1.7
NUP116YMR047C APC4Q04601 652 aa4.42□□□□□ -1.7
NUP116YMR047C MRPL35Q06678 367 aa4.42□□□□□ -1.7
NUP116YMR047C AGP1P25376 633 aa4.41□□□□□ -1.7
NUP116YMR047C IDH1P28834 360 aaKnown RBP RIP-Chip data4.41□□□□□ -1.7not detected
NUP116YMR047C TRM9P49957 279 aa4.41□□□□□ -1.7
NUP116YMR047C IGO1P53897 168 aa4.41□□□□□ -1.7
NUP116YMR047C NRK1P53915 240 aa4.41□□□□□ -1.7
NUP116YMR047C YLR036CQ07986 203 aa4.41□□□□□ -1.7
NUP116YMR047C PSF1Q12488 208 aa4.41□□□□□ -1.7
NUP116YMR047C ACC1Q00955 2233 aaKnown RBP4.41□□□□□ -1.7
NUP116YMR047C SNF4P12904 322 aa4.41□□□□□ -1.7
NUP116YMR047C STE14P32584 239 aa4.41□□□□□ -1.7
NUP116YMR047C MRPL4P36517 319 aa4.41□□□□□ -1.7
NUP116YMR047C LAG1P38703 411 aa4.41□□□□□ -1.7
NUP116YMR047C SLS1P42900 643 aa4.41□□□□□ -1.7
NUP116YMR047C PMT4P46971 762 aa4.41□□□□□ -1.7
NUP116YMR047C MRPL19P53875 158 aa4.41□□□□□ -1.7
NUP116YMR047C MRP51Q02950 344 aa4.41□□□□□ -1.7
NUP116YMR047C PEX12Q04370 399 aa4.41□□□□□ -1.7
NUP116YMR047C AI1P03875 834 aa4.41□□□□□ -1.7
NUP116YMR047C MSS18P08593 268 aa4.41□□□□□ -1.7
NUP116YMR047C SAC7P17121 654 aa4.41□□□□□ -1.7
NUP116YMR047C ERG8P24521 451 aa4.41□□□□□ -1.7
NUP116YMR047C CSM1P25651 190 aa4.41□□□□□ -1.7
NUP116YMR047C RAD14P28519 371 aa4.41□□□□□ -1.7
NUP116YMR047C ASK1P35734 292 aa4.41□□□□□ -1.7
NUP116YMR047C CUS2P53830 285 aaPredicted RBP4.41□□□□□ -1.7
NUP116YMR047C RHO5P53879 331 aaKnown RBP4.41□□□□□ -1.7
NUP116YMR047C RHO4Q00246 291 aa4.41□□□□□ -1.7
NUP116YMR047C YPL067CQ02754 198 aa4.41□□□□□ -1.7
NUP116YMR047C SEC13Q04491 297 aaKnown RBP4.41□□□□□ -1.7
NUP116YMR047C RIF2Q06208 395 aa4.41□□□□□ -1.7
NUP116YMR047C YOR376WQ08900 122 aa4.41□□□□□ -1.7
NUP116YMR047C YPR063CQ12160 140 aa4.41□□□□□ -1.7
NUP116YMR047C NUM1Q00402 2748 aa4.4□□□□□ -1.7
NUP116YMR047C PRE1P22141 198 aaKnown RBP4.4□□□□□ -1.7
Retrieved 100 of 5,963 RNA–protein pairs in 29.5 ms