RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	YPS6	P40583	537 aa		4.17	□□□□□ -1.74
RRP40	YOL142W	CIS3	P47001	227 aa		4.17	□□□□□ -1.74
RRP40	YOL142W	HXT11	P54862	567 aa		4.17	□□□□□ -1.74
RRP40	YOL142W	ADD37	Q03233	198 aa		4.17	□□□□□ -1.74
RRP40	YOL142W	GAS3	Q03655	524 aa		4.17	□□□□□ -1.74
RRP40	YOL142W	HPT1	Q04178	221 aa	Known RBP	4.17	□□□□□ -1.74
RRP40	YOL142W	SPT3	P06844	337 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	RPB4	P20433	221 aa	Predicted RBP	4.16	□□□□□ -1.74
RRP40	YOL142W	PPH21	P23594	369 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	SIN4	P32259	974 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	MGM101	P32787	269 aa	Known RBP	4.16	□□□□□ -1.74
RRP40	YOL142W	ARA1	P38115	344 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	YBR062C	P38239	180 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	RFC3	P38629	340 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	SSU1	P41930	458 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	MPS2	P53159	387 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	SHY1	P53266	389 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	YNR048W	P53740	393 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	NHP10	Q03435	203 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	TVP15	Q03860	143 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	YML096W	Q04489	525 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	PAL1	Q05518	499 aa	Known RBP	4.16	□□□□□ -1.74
RRP40	YOL142W	RIF2	Q06208	395 aa		4.16	□□□□□ -1.74
RRP40	YOL142W	RRG7	Q08774	242 aa	Predicted RBP	4.16	□□□□□ -1.74
RRP40	YOL142W	STE3	P06783	470 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	RPL40A	P0CH08	128 aa	Known RBP	4.15	□□□□□ -1.75
RRP40	YOL142W	RPL40B	P0CH09	128 aa	Known RBP	4.15	□□□□□ -1.75
RRP40	YOL142W	NPL6	P32832	435 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	PIM1	P36775	1133 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	YPT35	P38815	214 aa	Known RBP	4.15	□□□□□ -1.75
RRP40	YOL142W	YHR127W	P38833	243 aa	Known RBP	4.15	□□□□□ -1.75
RRP40	YOL142W	LYS1	P38998	373 aa	RIP-Chip data	4.15	□□□□□ -1.75	not detected
RRP40	YOL142W	YAL037W	P39728	267 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	GIM4	P40005	111 aa	Known RBP	4.15	□□□□□ -1.75
RRP40	YOL142W	SEC27	P41811	889 aa	Known RBP	4.15	□□□□□ -1.75
RRP40	YOL142W	ZIM17	P42844	174 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	YJR011C	P47086	261 aa	Predicted RBP	4.15	□□□□□ -1.75
RRP40	YOL142W	YGR015C	P53208	328 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	SLM2	P53955	656 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	LSM3	P57743	89 aa	Known RBP	4.15	□□□□□ -1.75
RRP40	YOL142W	YMR181C	Q03231	154 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	BCH1	Q05029	724 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	MDM30	Q05930	598 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	SEC10	Q06245	871 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	RPN8	Q08723	338 aa	Known RBP	4.15	□□□□□ -1.75
RRP40	YOL142W	RRP42	Q12277	265 aa	Predicted RBP	4.15	□□□□□ -1.75
RRP40	YOL142W	TEL1	P38110	2787 aa		4.15	□□□□□ -1.75
RRP40	YOL142W	RPL1A	P0CX43	217 aa	Known RBP	4.14	□□□□□ -1.75
RRP40	YOL142W	RPL1B	P0CX44	217 aa	Known RBP	4.14	□□□□□ -1.75
RRP40	YOL142W	NMT1	P14743	455 aa		4.14	□□□□□ -1.75
RRP40	YOL142W	NIP1	P32497	812 aa	Known RBP	4.14	□□□□□ -1.75
RRP40	YOL142W	YBR137W	P38276	179 aa		4.14	□□□□□ -1.75
RRP40	YOL142W	HSM3	P38348	480 aa		4.14	□□□□□ -1.75
RRP40	YOL142W	MTC6	P38849	526 aa		4.14	□□□□□ -1.75
RRP40	YOL142W	YRB1	P41920	201 aa	Known RBP	4.14	□□□□□ -1.75
RRP40	YOL142W	RPS0B	P46654	252 aa	Known RBP	4.14	□□□□□ -1.75
RRP40	YOL142W	YJR149W	P47177	404 aa		4.14	□□□□□ -1.75
RRP40	YOL142W	SDT1	P53078	280 aa		4.14	□□□□□ -1.75
RRP40	YOL142W	EFM5	P53200	248 aa	Known RBP	4.14	□□□□□ -1.75
RRP40	YOL142W	RHO3	Q00245	231 aa	Known RBP	4.14	□□□□□ -1.75
RRP40	YOL142W	GIP3	Q03016	1276 aa		4.14	□□□□□ -1.75
RRP40	YOL142W	RRP45	Q05636	305 aa	Known RBP	4.14	□□□□□ -1.75
RRP40	YOL142W	YPL245W	Q12179	454 aa	Known RBP	4.14	□□□□□ -1.75
RRP40	YOL142W	SCM3	Q12334	223 aa		4.14	□□□□□ -1.75
RRP40	YOL142W	ORT1	Q12375	292 aa		4.14	□□□□□ -1.75
RRP40	YOL142W	IRA1	P18963	3092 aa		4.14	□□□□□ -1.75
RRP40	YOL142W	MDM35	O60200	86 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	ADH2	P00331	348 aa	Known RBP	4.13	□□□□□ -1.75
RRP40	YOL142W	RSR1	P13856	272 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	FUR1	P18562	216 aa	Known RBP	4.13	□□□□□ -1.75
RRP40	YOL142W	CDC10	P25342	322 aa	Known RBP	4.13	□□□□□ -1.75
RRP40	YOL142W	BUB2	P26448	306 aa	Predicted RBP	4.13	□□□□□ -1.75
RRP40	YOL142W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
RRP40	YOL142W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
RRP40	YOL142W	RPS1A	P33442	255 aa	Known RBP	4.13	□□□□□ -1.75
RRP40	YOL142W	TRM7	P38238	310 aa	Known RBP	4.13	□□□□□ -1.75
RRP40	YOL142W	INM1	P38710	295 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	GGC1	P38988	300 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	YER034W	P40022	185 aa	Known RBP	4.13	□□□□□ -1.75
RRP40	YOL142W	YJR030C	P47101	745 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	HMS2	P47175	358 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	TAF6	P53040	516 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	MDM34	P53083	459 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	MRS2	Q01926	470 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	EGD1	Q02642	157 aa	Known RBP	4.13	□□□□□ -1.75
RRP40	YOL142W	VHS1	Q03785	461 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	YMR111C	Q04461	462 aa	Predicted RBP	4.13	□□□□□ -1.75
RRP40	YOL142W	HRI1	Q05905	244 aa	Known RBP	4.13	□□□□□ -1.75
RRP40	YOL142W	SGT1	Q08446	395 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	VAM3	Q12241	283 aa		4.13	□□□□□ -1.75
RRP40	YOL142W	CLB1	P24868	471 aa		4.12	□□□□□ -1.75
RRP40	YOL142W	LSB5	P25369	354 aa		4.12	□□□□□ -1.75
RRP40	YOL142W	CDC13	P32797	924 aa	Known RBP	4.12	□□□□□ -1.75
RRP40	YOL142W	SKN1	P33336	771 aa		4.12	□□□□□ -1.75
RRP40	YOL142W	NTC20	P38302	140 aa	Predicted RBP	4.12	□□□□□ -1.75
RRP40	YOL142W	SRB7	P47822	140 aa		4.12	□□□□□ -1.75
RRP40	YOL142W	GTR2	P53290	341 aa		4.12	□□□□□ -1.75
RRP40	YOL142W	NRM1	P53718	249 aa		4.12	□□□□□ -1.75
RRP40	YOL142W	FMN1	Q03778	218 aa		4.12	□□□□□ -1.75
RRP40	YOL142W	COS7	Q07788	383 aa		4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 20.1 ms