RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W TAZ1Q06510 381 aa5.39□□□□□ -1.55
ATG4YNL223W IPK1Q06667 281 aa5.39□□□□□ -1.55
ATG4YNL223W BRE4Q07660 1125 aa5.39□□□□□ -1.55
ATG4YNL223W ENB1Q08299 606 aa5.39□□□□□ -1.55
ATG4YNL223W PEX27Q08580 376 aa5.39□□□□□ -1.55
ATG4YNL223W YDL109CQ12103 647 aa5.39□□□□□ -1.55
ATG4YNL223W PRP46Q12417 451 aaPredicted RBP5.39□□□□□ -1.55
ATG4YNL223W TAD3Q9URQ3 322 aa5.39□□□□□ -1.55
ATG4YNL223W CDC31P06704 161 aaKnown RBP5.38□□□□□ -1.55
ATG4YNL223W CYT1P07143 309 aa5.38□□□□□ -1.55
ATG4YNL223W YGL041W-AP0C5N3 154 aa5.38□□□□□ -1.55
ATG4YNL223W NAR1P23503 491 aaKnown RBP5.38□□□□□ -1.55
ATG4YNL223W PRE7P23724 241 aaKnown RBP5.38□□□□□ -1.55
ATG4YNL223W PUP2P32379 260 aa5.38□□□□□ -1.55
ATG4YNL223W HSP150P32478 413 aa5.38□□□□□ -1.55
ATG4YNL223W PUB1P32588 453 aaKnown RBP RIP-Chip data5.38□□□□□ -1.55not detected
ATG4YNL223W TRS65P32893 560 aa5.38□□□□□ -1.55
ATG4YNL223W RIB7P33312 244 aa5.38□□□□□ -1.55
ATG4YNL223W ECT1P33412 323 aa5.38□□□□□ -1.55
ATG4YNL223W MSN4P33749 630 aa5.38□□□□□ -1.55
ATG4YNL223W LST4P34239 828 aa5.38□□□□□ -1.55
ATG4YNL223W RSM22P36056 628 aa5.38□□□□□ -1.55
ATG4YNL223W YBR063CP38083 404 aa5.38□□□□□ -1.55
ATG4YNL223W DTR1P38125 572 aa5.38□□□□□ -1.55
ATG4YNL223W YIL165CP40446 119 aa5.38□□□□□ -1.55
ATG4YNL223W SAM37P50110 327 aa5.38□□□□□ -1.55
ATG4YNL223W PPT1P53043 513 aa5.38□□□□□ -1.55
ATG4YNL223W IMO32P53219 342 aa5.38□□□□□ -1.55
ATG4YNL223W MPP6P53725 186 aaPredicted RBP5.38□□□□□ -1.55
ATG4YNL223W TRS23Q03784 219 aa5.38□□□□□ -1.55
ATG4YNL223W RDR1Q08904 546 aa5.38□□□□□ -1.55
ATG4YNL223W TY1A-NL1Q12391 440 aaKnown RBP5.38□□□□□ -1.55
ATG4YNL223W SET6Q12529 373 aa5.38□□□□□ -1.55
ATG4YNL223W YOS9Q99220 542 aa5.38□□□□□ -1.55
ATG4YNL223W KIN28P06242 306 aa5.37□□□□□ -1.55
ATG4YNL223W SIR2P06700 562 aa5.37□□□□□ -1.55
ATG4YNL223W NUP1P20676 1076 aa5.37□□□□□ -1.55
ATG4YNL223W RPA135P22138 1203 aaKnown RBP5.37□□□□□ -1.55
ATG4YNL223W MDH3P32419 343 aaKnown RBP RIP-Chip data5.37□□□□□ -1.55not detected
ATG4YNL223W SLC1P33333 303 aa5.37□□□□□ -1.55
ATG4YNL223W THI2P38141 450 aa5.37□□□□□ -1.55
ATG4YNL223W SER2P42941 309 aa5.37□□□□□ -1.55
ATG4YNL223W MRH4P53166 561 aa5.37□□□□□ -1.55
ATG4YNL223W PAU12P53343 120 aa5.37□□□□□ -1.55
ATG4YNL223W YAT1P80235 687 aa5.37□□□□□ -1.55
ATG4YNL223W MRPL1Q04599 285 aa5.37□□□□□ -1.55
ATG4YNL223W DCR2Q05924 578 aa5.37□□□□□ -1.55
ATG4YNL223W COQ10Q08058 207 aa5.37□□□□□ -1.55
ATG4YNL223W HRT1Q08273 121 aa5.37□□□□□ -1.55
ATG4YNL223W BTS1Q12051 335 aa5.37□□□□□ -1.55
ATG4YNL223W RLM1Q12224 676 aa5.37□□□□□ -1.55
ATG4YNL223W FRE6Q12473 712 aa5.37□□□□□ -1.55
ATG4YNL223W YBL113CQ7M4S9 792 aa5.37□□□□□ -1.55
ATG4YNL223W EXG1P23776 448 aaKnown RBP5.36□□□□□ -1.55
ATG4YNL223W CWH43P25618 953 aa5.36□□□□□ -1.55
ATG4YNL223W AHC2P25649 128 aa5.36□□□□□ -1.55
ATG4YNL223W FUN19P28003 413 aaPredicted RBP5.36□□□□□ -1.55
ATG4YNL223W FUN26P31381 517 aa5.36□□□□□ -1.55
ATG4YNL223W SPT14P32363 452 aa5.36□□□□□ -1.55
ATG4YNL223W SDS22P36047 338 aa5.36□□□□□ -1.55
ATG4YNL223W PAU24P38155 120 aa5.36□□□□□ -1.55
ATG4YNL223W MBA1P38300 278 aa5.36□□□□□ -1.55
ATG4YNL223W IPI1P38803 334 aaPredicted RBP5.36□□□□□ -1.55
ATG4YNL223W YHR180WP38868 163 aa5.36□□□□□ -1.55
ATG4YNL223W FET3P38993 636 aa5.36□□□□□ -1.55
ATG4YNL223W FAA3P39002 694 aa5.36□□□□□ -1.55
ATG4YNL223W YJL193WP39542 402 aa5.36□□□□□ -1.55
ATG4YNL223W SDP1P40479 209 aa5.36□□□□□ -1.55
ATG4YNL223W CUP9P41817 306 aa5.36□□□□□ -1.55
ATG4YNL223W PAM16P42949 149 aa5.36□□□□□ -1.55
ATG4YNL223W SFH5P47008 294 aa5.36□□□□□ -1.55
ATG4YNL223W VOA1P53262 265 aa5.36□□□□□ -1.55
ATG4YNL223W PXR1P53335 271 aaPredicted RBP5.36□□□□□ -1.55
ATG4YNL223W OGG1P53397 376 aaPredicted RBP5.36□□□□□ -1.55
ATG4YNL223W CUZ1P53899 274 aa5.36□□□□□ -1.55
ATG4YNL223W MSS11Q03825 758 aa5.36□□□□□ -1.55
ATG4YNL223W HLR1Q04429 423 aa5.36□□□□□ -1.55
ATG4YNL223W PEX10Q05568 337 aa5.36□□□□□ -1.55
ATG4YNL223W GPN3Q06543 272 aa5.36□□□□□ -1.55
ATG4YNL223W RRG7Q08774 242 aaPredicted RBP5.36□□□□□ -1.55
ATG4YNL223W MET32Q12041 191 aa5.36□□□□□ -1.55
ATG4YNL223W FRE7Q12333 620 aa5.36□□□□□ -1.55
ATG4YNL223W SUS1Q6WNK7 96 aa5.36□□□□□ -1.55
ATG4YNL223W FAS1P07149 2051 aaKnown RBP5.36□□□□□ -1.55
ATG4YNL223W HMG1P12683 1054 aa5.35□□□□□ -1.55
ATG4YNL223W RPB8P20436 146 aa5.35□□□□□ -1.55
ATG4YNL223W GAS1P22146 559 aaKnown RBP5.35□□□□□ -1.55
ATG4YNL223W PUT3P25502 979 aaPredicted RBP5.35□□□□□ -1.55
ATG4YNL223W PTC6P25646 442 aa5.35□□□□□ -1.55
ATG4YNL223W PAD1P33751 242 aaKnown RBP RIP-Chip data5.35□□□□□ -1.55not detected
ATG4YNL223W CHK1P38147 527 aa5.35□□□□□ -1.55
ATG4YNL223W VBA2P38358 474 aaKnown RBP5.35□□□□□ -1.55
ATG4YNL223W MLH1P38920 769 aa5.35□□□□□ -1.55
ATG4YNL223W PHO90P39535 881 aa5.35□□□□□ -1.55
ATG4YNL223W MIT1P40002 666 aa5.35□□□□□ -1.55
ATG4YNL223W NAS2P40555 220 aa5.35□□□□□ -1.55
ATG4YNL223W ATG18P43601 500 aa5.35□□□□□ -1.55
ATG4YNL223W YMR252CQ04814 134 aa5.35□□□□□ -1.55
ATG4YNL223W UTP21Q06078 939 aaPredicted RBP5.35□□□□□ -1.55
ATG4YNL223W RRP9Q06506 573 aaKnown RBP5.35□□□□□ -1.55
Retrieved 100 of 5,963 RNA–protein pairs in 17.4 ms