RNA–Protein interactions for RNA: YPL085W

SEC16, Transcript of COPII vesicle coat protein required for ER transport vesicle budding, yeast

Gene SEC16, Length 6,588 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC16	YPL085W	TY1B-A	O13527	1196 aa	Known RBP	2.62	□□□□□ -1.99
SEC16	YPL085W	PRP5	P21372	849 aa	Predicted RBP	2.62	□□□□□ -1.99
SEC16	YPL085W	UTP18	P40362	594 aa	Predicted RBP	2.62	□□□□□ -1.99
SEC16	YPL085W	TCB1	Q12466	1186 aa		2.62	□□□□□ -1.99
SEC16	YPL085W	TAF5	P38129	798 aa		2.61	□□□□□ -1.99
SEC16	YPL085W	SGM1	P47166	707 aa		2.61	□□□□□ -1.99
SEC16	YPL085W	PIL1	P53252	339 aa	Known RBP	2.61	□□□□□ -1.99
SEC16	YPL085W	CWC22	P53333	577 aa	Known RBP	2.61	□□□□□ -1.99
SEC16	YPL085W	JJJ1	P53863	590 aa		2.61	□□□□□ -1.99
SEC16	YPL085W	NFU1	P32860	256 aa		2.61	□□□□□ -1.99
SEC16	YPL085W	VPS24	P36095	224 aa	Known RBP	2.61	□□□□□ -1.99
SEC16	YPL085W	ALD2	P47771	506 aa		2.61	□□□□□ -1.99
SEC16	YPL085W	RIA1	P53893	1110 aa		2.61	□□□□□ -1.99
SEC16	YPL085W	TIM23	P32897	222 aa		2.61	□□□□□ -1.99
SEC16	YPL085W	KDX1	P36005	433 aa		2.61	□□□□□ -1.99
SEC16	YPL085W	ADR1	P07248	1323 aa		2.61	□□□□□ -1.99
SEC16	YPL085W	TIF4632	P39936	914 aa	Known RBP	2.61	□□□□□ -1.99
SEC16	YPL085W	AKL1	P38080	1108 aa	Known RBP	2.6	□□□□□ -1.99
SEC16	YPL085W	IOC3	P43596	787 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	RMT2	Q03305	412 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	GIN4	Q12263	1142 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	GCD7	P32502	381 aa	Predicted RBP	2.6	□□□□□ -1.99
SEC16	YPL085W	RNT1	Q02555	471 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	UGA2	P38067	497 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	SMC3	P47037	1230 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	YML020W	Q03722	664 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	CRF1	Q04930	467 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	IRC3	Q06683	689 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	CEX1	Q12453	761 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	CYB2	P00175	591 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	RPS19A	P07280	144 aa	Known RBP	2.6	□□□□□ -1.99
SEC16	YPL085W	RPS19B	P07281	144 aa	Predicted RBP	2.6	□□□□□ -1.99
SEC16	YPL085W	OPI1	P21957	404 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	CPS1	P27614	576 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	COS5	P47187	383 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	YDL144C	Q07589	356 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	SDH5	Q08230	162 aa		2.6	□□□□□ -1.99
SEC16	YPL085W	KCC4	P25389	1037 aa		2.59	□□□□□ -1.99
SEC16	YPL085W	PSH1	Q12161	406 aa		2.59	□□□□□ -1.99
SEC16	YPL085W	GRX6	Q12438	231 aa		2.59	□□□□□ -1.99
SEC16	YPL085W	LEU3	P08638	886 aa		2.59	□□□□□ -1.99
SEC16	YPL085W	RPC82	P32349	654 aa		2.59	□□□□□ -1.99
SEC16	YPL085W	SLX8	P40072	274 aa		2.59	□□□□□ -1.99
SEC16	YPL085W	YML119W	Q03208	357 aa		2.59	□□□□□ -1.99
SEC16	YPL085W	ESC2	Q06340	456 aa		2.59	□□□□□ -1.99
SEC16	YPL085W	RPA190	P10964	1664 aa	Known RBP	2.59	□□□□□ -1.99
SEC16	YPL085W	PRI1	P10363	409 aa		2.59	□□□□□ -2
SEC16	YPL085W	SEC23	P15303	768 aa	Known RBP	2.59	□□□□□ -2
SEC16	YPL085W	RPL22B	P56628	122 aa	Known RBP	2.59	□□□□□ -2
SEC16	YPL085W	ITT1	Q04638	464 aa		2.59	□□□□□ -2
SEC16	YPL085W	YLR271W	Q06152	274 aa		2.59	□□□□□ -2
SEC16	YPL085W	ZDS1	P50111	915 aa	Known RBP	2.59	□□□□□ -2
SEC16	YPL085W	RPN7	Q06103	429 aa	Known RBP	2.59	□□□□□ -2
SEC16	YPL085W	TYW1	Q08960	810 aa	Known RBP	2.59	□□□□□ -2
SEC16	YPL085W	YOR093C	Q12275	1648 aa		2.59	□□□□□ -2
SEC16	YPL085W	APC5	Q08683	685 aa		2.58	□□□□□ -2
SEC16	YPL085W	HAT1	Q12341	374 aa		2.58	□□□□□ -2
SEC16	YPL085W	VPS35	P34110	944 aa		2.58	□□□□□ -2
SEC16	YPL085W	TOM71	P38825	639 aa	Known RBP	2.58	□□□□□ -2
SEC16	YPL085W	MPC54	Q08550	464 aa		2.58	□□□□□ -2
SEC16	YPL085W	YKR018C	P36114	725 aa		2.58	□□□□□ -2
SEC16	YPL085W	SNU71	P53207	620 aa	Known RBP	2.58	□□□□□ -2
SEC16	YPL085W	RAD3	P06839	778 aa		2.58	□□□□□ -2
SEC16	YPL085W	RPB2	P08518	1224 aa	Known RBP	2.58	□□□□□ -2
SEC16	YPL085W	MPH3	P0CE00	602 aa		2.58	□□□□□ -2
SEC16	YPL085W	PDR1	P12383	1068 aa		2.58	□□□□□ -2
SEC16	YPL085W	GLC3	P32775	704 aa		2.58	□□□□□ -2
SEC16	YPL085W	TIF5	P38431	405 aa	Known RBP	2.58	□□□□□ -2
SEC16	YPL085W	NTE1	Q04958	1679 aa		2.58	□□□□□ -2
SEC16	YPL085W	DOP1	Q03921	1698 aa		2.58	□□□□□ -2
SEC16	YPL085W	YHL017W	P38745	532 aa		2.58	□□□□□ -2
SEC16	YPL085W	PLP2	Q12017	286 aa		2.58	□□□□□ -2
SEC16	YPL085W	RPO21	P04050	1733 aa	Known RBP	2.58	□□□□□ -2
SEC16	YPL085W	ELM1	P32801	640 aa		2.58	□□□□□ -2
SEC16	YPL085W	RNR2	P09938	399 aa	Known RBP	2.57	□□□□□ -2
SEC16	YPL085W	PEX14	P53112	341 aa		2.57	□□□□□ -2
SEC16	YPL085W	YOL057W	Q08225	711 aa		2.57	□□□□□ -2
SEC16	YPL085W	MRD1	Q06106	887 aa	Known RBP	2.57	□□□□□ -2
SEC16	YPL085W	ACK1	Q07622	623 aa	Predicted RBP	2.57	□□□□□ -2
SEC16	YPL085W	PER1	P25625	357 aa		2.57	□□□□□ -2
SEC16	YPL085W	CSE4	P36012	229 aa		2.57	□□□□□ -2
SEC16	YPL085W	TPS3	P38426	1054 aa	Known RBP	2.57	□□□□□ -2
SEC16	YPL085W	DSD1	P53095	428 aa		2.57	□□□□□ -2
SEC16	YPL085W	ATG38	Q05789	226 aa	Known RBP	2.57	□□□□□ -2
SEC16	YPL085W	CSR1	Q06705	408 aa	Known RBP	2.57	□□□□□ -2
SEC16	YPL085W	SRO9	P25567	434 aa	Known RBP	2.57	□□□□□ -2
SEC16	YPL085W	KEX1	P09620	729 aa		2.56	□□□□□ -2
SEC16	YPL085W	CDC11	P32458	415 aa		2.56	□□□□□ -2
SEC16	YPL085W	MLC1	P53141	149 aa		2.56	□□□□□ -2
SEC16	YPL085W	MSB4	Q12317	492 aa		2.56	□□□□□ -2
SEC16	YPL085W	GFA1	P14742	717 aa	Known RBP	2.56	□□□□□ -2
SEC16	YPL085W	YKT6	P36015	200 aa	Known RBP	2.56	□□□□□ -2
SEC16	YPL085W	YBP2	P53169	641 aa		2.56	□□□□□ -2
SEC16	YPL085W	CNM67	P53865	581 aa	Known RBP	2.56	□□□□□ -2
SEC16	YPL085W	PHO87	P25360	923 aa		2.56	□□□□□ -2
SEC16	YPL085W	RLP7	P40693	322 aa	Known RBP	2.56	□□□□□ -2
SEC16	YPL085W	YMR074C	Q04773	145 aa		2.56	□□□□□ -2
SEC16	YPL085W	NTH2	P35172	780 aa		2.56	□□□□□ -2
SEC16	YPL085W	TCD1	P38756	429 aa		2.56	□□□□□ -2
SEC16	YPL085W	VID30	P53076	958 aa		2.56	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 25.3 ms