RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W SRF1Q12516 437 aa9.58□□□□□ -0.88
VPS28YPL065W LCB5Q06147 687 aaKnown RBP9.57□□□□□ -0.88
VPS28YPL065W PTK2P47116 818 aaKnown RBP9.52□□□□□ -0.89
VPS28YPL065W YLR346CQ06139 101 aa9.51□□□□□ -0.89
VPS28YPL065W FIG4P42837 879 aa9.47□□□□□ -0.89
VPS28YPL065W TEC1P18412 486 aa9.46□□□□□ -0.9
VPS28YPL065W EMW1P42842 904 aaKnown RBP9.46□□□□□ -0.9
VPS28YPL065W NUP85P46673 744 aa9.46□□□□□ -0.9
VPS28YPL065W MAK16P10962 306 aaPredicted RBP9.45□□□□□ -0.9
VPS28YPL065W YBL086CP38177 466 aa9.45□□□□□ -0.9
VPS28YPL065W LEO1P38439 464 aa9.45□□□□□ -0.9
VPS28YPL065W ARG82P07250 355 aa9.44□□□□□ -0.9
VPS28YPL065W GUA1P38625 525 aaKnown RBP9.44□□□□□ -0.9
VPS28YPL065W APP1P53933 587 aa9.43□□□□□ -0.9
VPS28YPL065W HPC2Q01448 625 aa9.42□□□□□ -0.9
VPS28YPL065W RGA2Q06407 1009 aa9.42□□□□□ -0.9
VPS28YPL065W CSE4P36012 229 aa9.41□□□□□ -0.9
VPS28YPL065W NAF1P53919 492 aaKnown RBP9.41□□□□□ -0.9
VPS28YPL065W OPT2Q06593 877 aa9.41□□□□□ -0.9
VPS28YPL065W GUT2P32191 649 aa9.39□□□□□ -0.91
VPS28YPL065W BRL1P38770 471 aa9.38□□□□□ -0.91
VPS28YPL065W AAD14P42884 376 aa9.38□□□□□ -0.91
VPS28YPL065W MKS1P34072 584 aa9.37□□□□□ -0.91
VPS28YPL065W GLY1P37303 387 aaKnown RBP9.37□□□□□ -0.91
VPS28YPL065W LSC2P53312 427 aa9.37□□□□□ -0.91
VPS28YPL065W ITT1Q04638 464 aa9.37□□□□□ -0.91
VPS28YPL065W MIP1P15801 1254 aa9.36□□□□□ -0.91
VPS28YPL065W YPR084WQ06821 456 aa9.36□□□□□ -0.91
VPS28YPL065W YDL176WQ12027 708 aa9.36□□□□□ -0.91
VPS28YPL065W SCW11P53189 542 aa9.35□□□□□ -0.91
VPS28YPL065W SPT5P27692 1063 aaKnown RBP9.34□□□□□ -0.91
VPS28YPL065W UBP2Q01476 1272 aa9.33□□□□□ -0.92
VPS28YPL065W STE20Q03497 939 aaKnown RBP9.33□□□□□ -0.92
VPS28YPL065W YBL036CP38197 257 aa9.32□□□□□ -0.92
VPS28YPL065W ACO2P39533 789 aa9.32□□□□□ -0.92
VPS28YPL065W BDS1Q08347 646 aa9.32□□□□□ -0.92
VPS28YPL065W FBP26P32604 452 aa9.31□□□□□ -0.92
VPS28YPL065W CAF120P53836 1060 aa9.31□□□□□ -0.92
VPS28YPL065W DFG5Q05031 458 aa9.31□□□□□ -0.92
VPS28YPL065W FRA1Q07825 749 aa9.3□□□□□ -0.92
VPS28YPL065W MRX12P47084 519 aa9.29□□□□□ -0.92
VPS28YPL065W RPP2BP02400 110 aaKnown RBP9.28□□□□□ -0.92
VPS28YPL065W YJR098CP47139 656 aa9.28□□□□□ -0.92
VPS28YPL065W TY1A-BLQ12266 440 aa9.28□□□□□ -0.92
VPS28YPL065W TFB3Q03290 321 aa9.27□□□□□ -0.93
VPS28YPL065W ATG20Q07528 640 aa9.27□□□□□ -0.93
VPS28YPL065W DLD1P32891 587 aa9.26□□□□□ -0.93
VPS28YPL065W STE6P12866 1290 aa9.25□□□□□ -0.93
VPS28YPL065W TCB1Q12466 1186 aa9.24□□□□□ -0.93
VPS28YPL065W ISU1Q03020 165 aa9.23□□□□□ -0.93
VPS28YPL065W MCM16Q12262 181 aa9.21□□□□□ -0.94
VPS28YPL065W YIR007WP40566 764 aa9.2□□□□□ -0.94
VPS28YPL065W EMP47P43555 445 aa9.2□□□□□ -0.94
VPS28YPL065W YPP1P46951 817 aa9.2□□□□□ -0.94
VPS28YPL065W HGH1P48362 394 aaKnown RBP9.2□□□□□ -0.94
VPS28YPL065W DLD3P39976 496 aaKnown RBP9.19□□□□□ -0.94
VPS28YPL065W PKC1P24583 1151 aa9.17□□□□□ -0.94
VPS28YPL065W OSH7P38755 437 aa9.17□□□□□ -0.94
VPS28YPL065W ATG3P40344 310 aa9.17□□□□□ -0.94
VPS28YPL065W YDJ1P25491 409 aaKnown RBP9.16□□□□□ -0.94
VPS28YPL065W YGR035CP53222 116 aa9.16□□□□□ -0.94
VPS28YPL065W ISF1P32488 338 aa9.15□□□□□ -0.94
VPS28YPL065W TAF7Q05021 590 aa9.15□□□□□ -0.94
VPS28YPL065W APL6P46682 809 aa9.14□□□□□ -0.95
VPS28YPL065W VTC4P47075 721 aa9.14□□□□□ -0.95
VPS28YPL065W ISR1Q06098 443 aaKnown RBP9.14□□□□□ -0.95
VPS28YPL065W ROG3P43602 733 aa9.12□□□□□ -0.95
VPS28YPL065W BIO2P32451 375 aa9.11□□□□□ -0.95
VPS28YPL065W TY1A-MR1Q04215 440 aa9.11□□□□□ -0.95
VPS28YPL065W UTP13Q05946 817 aaKnown RBP9.11□□□□□ -0.95
VPS28YPL065W SPT2P06843 333 aaPredicted RBP9.09□□□□□ -0.95
VPS28YPL065W SUP45P12385 437 aaKnown RBP9.09□□□□□ -0.95
VPS28YPL065W TRK2P28584 889 aa9.09□□□□□ -0.95
VPS28YPL065W UTR2P32623 467 aa9.09□□□□□ -0.95
VPS28YPL065W HPF1Q05164 967 aa9.09□□□□□ -0.95
VPS28YPL065W DAT1P13483 248 aaKnown RBP9.08□□□□□ -0.96
VPS28YPL065W DAL1P32375 460 aa9.08□□□□□ -0.96
VPS28YPL065W TBS1P38114 1094 aa9.08□□□□□ -0.96
VPS28YPL065W YNL108CP53929 270 aa9.08□□□□□ -0.96
VPS28YPL065W WTM2Q12206 467 aa9.07□□□□□ -0.96
VPS28YPL065W YJL007CP47080 104 aa9.06□□□□□ -0.96
VPS28YPL065W CDC19P00549 500 aaKnown RBP9.05□□□□□ -0.96
VPS28YPL065W DPH6Q12429 685 aa9.05□□□□□ -0.96
VPS28YPL065W ENO2P00925 437 aaKnown RBP9.04□□□□□ -0.96
VPS28YPL065W SOH1P38633 127 aa9.04□□□□□ -0.96
VPS28YPL065W MSN5P52918 1224 aa9.04□□□□□ -0.96
VPS28YPL065W LYS5P50113 272 aa9.03□□□□□ -0.96
VPS28YPL065W HAL5P38970 855 aaKnown RBP9.02□□□□□ -0.97
VPS28YPL065W YPR204WQ08995 1032 aa9.02□□□□□ -0.97
VPS28YPL065W CCP1P00431 361 aa9□□□□□ -0.97
VPS28YPL065W RIM21P48565 533 aa9□□□□□ -0.97
VPS28YPL065W AHP1P38013 176 aaKnown RBP8.98□□□□□ -0.97
VPS28YPL065W SSN3P39073 555 aa8.98□□□□□ -0.97
VPS28YPL065W UBP15P50101 1230 aa8.98□□□□□ -0.97
VPS28YPL065W NAM8Q00539 523 aaKnown RBP8.98□□□□□ -0.97
VPS28YPL065W HDA3Q06623 655 aa8.98□□□□□ -0.97
VPS28YPL065W RPL34BP40525 121 aaKnown RBP8.97□□□□□ -0.97
VPS28YPL065W BIM1P40013 344 aa8.96□□□□□ -0.98
VPS28YPL065W SUM1P46676 1062 aa8.96□□□□□ -0.98
VPS28YPL065W DMA2P53924 522 aa8.96□□□□□ -0.98
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms