RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeastyeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
WHI3YNL197C YPR015CQ12531 247 aa5.48□□□□□ -1.53
WHI3YNL197C RAS1P01119 309 aa5.47□□□□□ -1.53
WHI3YNL197C SSF1P38789 453 aaPredicted RBP5.47□□□□□ -1.53
WHI3YNL197C RPA14P50106 137 aa5.47□□□□□ -1.53
WHI3YNL197C PAC1P39946 494 aaKnown RBP5.47□□□□□ -1.53
WHI3YNL197C EMP47P43555 445 aa5.47□□□□□ -1.53
WHI3YNL197C APL6P46682 809 aa5.47□□□□□ -1.53
WHI3YNL197C MRX12P47084 519 aa5.47□□□□□ -1.53
WHI3YNL197C YPR097WQ06839 1073 aa5.47□□□□□ -1.53
WHI3YNL197C FRA1Q07825 749 aa5.46□□□□□ -1.54
WHI3YNL197C GCD11P32481 527 aaKnown RBP5.46□□□□□ -1.54
WHI3YNL197C FIG4P42837 879 aa5.46□□□□□ -1.54
WHI3YNL197C SEN54Q02825 467 aaPredicted RBP5.46□□□□□ -1.54
WHI3YNL197C PDC1P06169 563 aaKnown RBP5.44□□□□□ -1.54
WHI3YNL197C ECM23Q02710 187 aa5.44□□□□□ -1.54
WHI3YNL197C TEC1P18412 486 aa5.43□□□□□ -1.54
WHI3YNL197C KTR7P40504 517 aa5.43□□□□□ -1.54
WHI3YNL197C HAT1Q12341 374 aa5.43□□□□□ -1.54
WHI3YNL197C GAL2P13181 574 aa5.42□□□□□ -1.54
WHI3YNL197C TPS3P38426 1054 aaKnown RBP5.42□□□□□ -1.54
WHI3YNL197C ALR1Q08269 859 aa5.42□□□□□ -1.54
WHI3YNL197C PRT1P06103 763 aaKnown RBP5.4□□□□□ -1.54
WHI3YNL197C AMS1P22855 1083 aa5.4□□□□□ -1.54
WHI3YNL197C RRN7P40992 514 aa5.4□□□□□ -1.54
WHI3YNL197C STE20Q03497 939 aaKnown RBP5.4□□□□□ -1.54
WHI3YNL197C GYP1Q08484 637 aa5.4□□□□□ -1.54
WHI3YNL197C GUT2P32191 649 aa5.4□□□□□ -1.55
WHI3YNL197C UBX7P38349 436 aa5.4□□□□□ -1.55
WHI3YNL197C HXT10P43581 546 aa5.4□□□□□ -1.55
WHI3YNL197C ENV9Q08651 330 aa5.4□□□□□ -1.55
WHI3YNL197C MOD5P07884 428 aa5.39□□□□□ -1.55
WHI3YNL197C TPD3P31383 635 aa5.39□□□□□ -1.55
WHI3YNL197C CWC15Q03772 175 aaKnown RBP5.39□□□□□ -1.55
WHI3YNL197C TRK1P12685 1235 aa5.38□□□□□ -1.55
WHI3YNL197C VAC17P25591 423 aa5.38□□□□□ -1.55
WHI3YNL197C SLD2P34252 453 aa5.38□□□□□ -1.55
WHI3YNL197C UTP13Q05946 817 aaKnown RBP5.38□□□□□ -1.55
WHI3YNL197C RRD1P40454 393 aaKnown RBP5.38□□□□□ -1.55
WHI3YNL197C ACS2P52910 683 aaKnown RBP5.38□□□□□ -1.55
WHI3YNL197C ROM1P53046 1155 aa5.38□□□□□ -1.55
WHI3YNL197C PHO87P25360 923 aa5.37□□□□□ -1.55
WHI3YNL197C SOH1P38633 127 aa5.37□□□□□ -1.55
WHI3YNL197C YEL077CQ3E7X8 1277 aa5.37□□□□□ -1.55
WHI3YNL197C KXD1P53158 218 aa5.36□□□□□ -1.55
WHI3YNL197C TRL1P09880 827 aaKnown RBP5.36□□□□□ -1.55
WHI3YNL197C HAL5P38970 855 aaKnown RBP5.36□□□□□ -1.55
WHI3YNL197C SAS4Q04003 481 aa5.36□□□□□ -1.55
WHI3YNL197C YBL113CQ7M4S9 792 aa5.36□□□□□ -1.55
WHI3YNL197C SDH2P21801 266 aa5.35□□□□□ -1.55
WHI3YNL197C ATG3P40344 310 aa5.35□□□□□ -1.55
WHI3YNL197C ITT1Q04638 464 aa5.35□□□□□ -1.55
WHI3YNL197C IXR1P33417 597 aa5.35□□□□□ -1.55
WHI3YNL197C ERP5P38819 212 aa5.35□□□□□ -1.55
WHI3YNL197C HAP4P14064 554 aa5.34□□□□□ -1.55
WHI3YNL197C PUF6Q04373 656 aaKnown RBP5.34□□□□□ -1.55
WHI3YNL197C TSC13Q99190 310 aa5.34□□□□□ -1.55
WHI3YNL197C HEM3P28789 327 aa5.33□□□□□ -1.56
WHI3YNL197C IPL1P38991 367 aa5.33□□□□□ -1.56
WHI3YNL197C BOL3P39724 118 aa5.33□□□□□ -1.56
WHI3YNL197C PAT1P25644 796 aaKnown RBP5.32□□□□□ -1.56
WHI3YNL197C GAS4Q08271 471 aa5.32□□□□□ -1.56
WHI3YNL197C CBC2Q08920 208 aaKnown RBP RIP-Chip data5.32□□□□□ -1.56not detected
WHI3YNL197C SPT16P32558 1035 aaKnown RBP5.31□□□□□ -1.56
WHI3YNL197C STM1P39015 273 aaKnown RBP5.31□□□□□ -1.56
WHI3YNL197C MDJ2P42834 146 aa5.31□□□□□ -1.56
WHI3YNL197C PDI1P17967 522 aaKnown RBP5.31□□□□□ -1.56
WHI3YNL197C RRN6P32786 894 aa5.31□□□□□ -1.56
WHI3YNL197C KAR5Q04746 504 aa5.31□□□□□ -1.56
WHI3YNL197C PNP1Q05788 311 aa5.31□□□□□ -1.56
WHI3YNL197C ISR1Q06098 443 aaKnown RBP5.31□□□□□ -1.56
WHI3YNL197C PAM1P37304 830 aaKnown RBP5.3□□□□□ -1.56
WHI3YNL197C SUV3P32580 737 aa5.29□□□□□ -1.56
WHI3YNL197C AIM9P40053 627 aaKnown RBP5.29□□□□□ -1.56
WHI3YNL197C ORC1P54784 914 aaPredicted RBP5.29□□□□□ -1.56
WHI3YNL197C RRP15Q06511 250 aaPredicted RBP5.29□□□□□ -1.56
WHI3YNL197C MSC6Q08818 692 aaKnown RBP5.29□□□□□ -1.56
WHI3YNL197C HDA3Q06623 655 aa5.29□□□□□ -1.56
WHI3YNL197C WHI5Q12416 295 aa5.29□□□□□ -1.56
WHI3YNL197C SRS2P12954 1174 aa5.28□□□□□ -1.56
WHI3YNL197C MIP1P15801 1254 aa5.28□□□□□ -1.56
WHI3YNL197C YHL050CP38721 697 aa5.28□□□□□ -1.56
WHI3YNL197C YHR219WP38900 624 aa5.28□□□□□ -1.56
WHI3YNL197C ATG1P53104 897 aa5.28□□□□□ -1.56
WHI3YNL197C SNU71P53207 620 aaKnown RBP5.28□□□□□ -1.56
WHI3YNL197C ATG20Q07528 640 aa5.28□□□□□ -1.56
WHI3YNL197C UBP1P25037 809 aa5.27□□□□□ -1.57
WHI3YNL197C PUN1Q06991 263 aa5.27□□□□□ -1.57
WHI3YNL197C SEC20P28791 383 aa5.27□□□□□ -1.57
WHI3YNL197C MRF1P30775 413 aaPredicted RBP5.27□□□□□ -1.57
WHI3YNL197C EMW1P42842 904 aaKnown RBP5.27□□□□□ -1.57
WHI3YNL197C GRS1P38088 690 aaKnown RBP5.26□□□□□ -1.57
WHI3YNL197C ALD4P46367 519 aaKnown RBP5.26□□□□□ -1.57
WHI3YNL197C ATE1P16639 503 aa5.25□□□□□ -1.57
WHI3YNL197C VAN1P23642 535 aa5.25□□□□□ -1.57
WHI3YNL197C PPX1P38698 397 aa5.25□□□□□ -1.57
WHI3YNL197C BDP1P46678 594 aa5.25□□□□□ -1.57
WHI3YNL197C ALD2P47771 506 aa5.25□□□□□ -1.57
WHI3YNL197C APP1P53933 587 aa5.25□□□□□ -1.57
WHI3YNL197C FRT1Q99332 602 aa5.25□□□□□ -1.57
WHI3YNL197C NTH2P35172 780 aa5.24□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 53.9 ms