RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C ESL2P36168 1195 aa6.73□□□□□ -1.33
VPS1YKR001C YGR130CP53278 816 aa6.73□□□□□ -1.33
VPS1YKR001C SLM3Q12093 417 aa6.73□□□□□ -1.33
VPS1YKR001C FUN12P39730 1002 aaKnown RBP6.72□□□□□ -1.33
VPS1YKR001C TPO2P53283 614 aa6.72□□□□□ -1.33
VPS1YKR001C RNA1P11745 407 aaKnown RBP6.71□□□□□ -1.33
VPS1YKR001C YKR075CP36155 307 aa6.71□□□□□ -1.33
VPS1YKR001C ATG36P46983 293 aa6.71□□□□□ -1.33
VPS1YKR001C GRX3Q03835 250 aa6.71□□□□□ -1.33
VPS1YKR001C COBP00163 385 aa6.71□□□□□ -1.34
VPS1YKR001C SPT21P35209 758 aa6.71□□□□□ -1.34
VPS1YKR001C YKL133CP36066 463 aa6.71□□□□□ -1.34
VPS1YKR001C PRY3P47033 881 aa6.71□□□□□ -1.34
VPS1YKR001C BRN1P38170 754 aa6.7□□□□□ -1.34
VPS1YKR001C RIM15P43565 1770 aa6.69□□□□□ -1.34
VPS1YKR001C YRF1-4O13559 1382 aa6.69□□□□□ -1.34
VPS1YKR001C RIX1P38883 763 aaPredicted RBP6.69□□□□□ -1.34
VPS1YKR001C MPP10P47083 593 aaKnown RBP6.69□□□□□ -1.34
VPS1YKR001C PRP43P53131 767 aaKnown RBP6.68□□□□□ -1.34
VPS1YKR001C PIL1P53252 339 aaKnown RBP6.68□□□□□ -1.34
VPS1YKR001C YNL011CP53980 444 aa6.68□□□□□ -1.34
VPS1YKR001C ASF1P32447 279 aa6.68□□□□□ -1.34
VPS1YKR001C BDF1P35817 686 aa6.67□□□□□ -1.34
VPS1YKR001C XKS1P42826 600 aa6.67□□□□□ -1.34
VPS1YKR001C SPC110P32380 944 aa6.65□□□□□ -1.34
VPS1YKR001C CSE4P36012 229 aa6.65□□□□□ -1.34
VPS1YKR001C ISW1P38144 1129 aa6.65□□□□□ -1.34
VPS1YKR001C ALD3P54114 506 aa6.65□□□□□ -1.34
VPS1YKR001C RPG1P38249 964 aaKnown RBP6.65□□□□□ -1.35
VPS1YKR001C NMD2P38798 1089 aaKnown RBP6.65□□□□□ -1.35
VPS1YKR001C MTR4P47047 1073 aaKnown RBP6.65□□□□□ -1.35
VPS1YKR001C RPS24AP0CX31 135 aaKnown RBP6.64□□□□□ -1.35
VPS1YKR001C RPS24BP0CX32 135 aaKnown RBP6.64□□□□□ -1.35
VPS1YKR001C VPS4P52917 437 aa6.64□□□□□ -1.35
VPS1YKR001C LEU2P04173 364 aaPredicted RBP6.63□□□□□ -1.35
VPS1YKR001C YLR419WQ06698 1435 aaKnown RBP6.63□□□□□ -1.35
VPS1YKR001C SPE2P21182 396 aa6.62□□□□□ -1.35
VPS1YKR001C YSH1Q06224 779 aaPredicted RBP6.61□□□□□ -1.35
VPS1YKR001C OSW7P43611 510 aa6.61□□□□□ -1.35
VPS1YKR001C EAF6P47128 113 aa6.61□□□□□ -1.35
VPS1YKR001C RTS3P53289 263 aa6.61□□□□□ -1.35
VPS1YKR001C JSN1P47135 1091 aaKnown RBP RIP-Chip data6.6□□□□□ -1.35not detected
VPS1YKR001C MEC3Q02574 474 aa6.6□□□□□ -1.35
VPS1YKR001C FRK1Q03002 865 aaPredicted RBP6.6□□□□□ -1.35
VPS1YKR001C DAL5P15365 543 aa6.59□□□□□ -1.35
VPS1YKR001C SIR4P11978 1358 aa6.59□□□□□ -1.35
VPS1YKR001C MSB4Q12317 492 aa6.59□□□□□ -1.35
VPS1YKR001C SAP155P43612 1002 aa6.58□□□□□ -1.36
VPS1YKR001C KIP3P53086 805 aaKnown RBP6.58□□□□□ -1.36
VPS1YKR001C ETT1Q08421 412 aaKnown RBP6.58□□□□□ -1.36
VPS1YKR001C TAF13P11747 167 aa6.58□□□□□ -1.36
VPS1YKR001C CHZ1P40019 153 aaPredicted RBP6.58□□□□□ -1.36
VPS1YKR001C BUG1Q12191 341 aa6.58□□□□□ -1.36
VPS1YKR001C PEA2P40091 420 aa6.57□□□□□ -1.36
VPS1YKR001C SEC3P33332 1336 aaKnown RBP6.56□□□□□ -1.36
VPS1YKR001C TOS1P38288 455 aa6.56□□□□□ -1.36
VPS1YKR001C ADE16P54113 591 aaKnown RBP6.56□□□□□ -1.36
VPS1YKR001C MHP1P43638 1398 aa6.55□□□□□ -1.36
VPS1YKR001C MCM1P11746 286 aa6.55□□□□□ -1.36
VPS1YKR001C SSA4P22202 642 aaKnown RBP6.55□□□□□ -1.36
VPS1YKR001C SSP1P38871 571 aa6.55□□□□□ -1.36
VPS1YKR001C MSN5P52918 1224 aa6.55□□□□□ -1.36
VPS1YKR001C NNF2P53253 936 aa6.55□□□□□ -1.36
VPS1YKR001C UTP22P53254 1237 aaPredicted RBP6.55□□□□□ -1.36
VPS1YKR001C CTT1P06115 562 aa6.55□□□□□ -1.36
VPS1YKR001C RAD4P14736 754 aa6.55□□□□□ -1.36
VPS1YKR001C CDC11P32458 415 aa6.55□□□□□ -1.36
VPS1YKR001C RCR1P38212 213 aa6.55□□□□□ -1.36
VPS1YKR001C RPO41P13433 1351 aaKnown RBP6.54□□□□□ -1.36
VPS1YKR001C YML133CQ03099 1374 aa6.54□□□□□ -1.36
VPS1YKR001C YLL067CQ07888 1374 aa6.54□□□□□ -1.36
VPS1YKR001C YLL066CQ99208 1374 aa6.54□□□□□ -1.36
VPS1YKR001C YER156CP40093 338 aaKnown RBP6.54□□□□□ -1.36
VPS1YKR001C PEX21P50091 288 aa6.54□□□□□ -1.36
VPS1YKR001C HSC82P15108 705 aaKnown RBP6.53□□□□□ -1.36
VPS1YKR001C HOS4P40480 1083 aa6.53□□□□□ -1.36
VPS1YKR001C GRE2Q12068 342 aaKnown RBP6.53□□□□□ -1.36
VPS1YKR001C SQS1P53866 767 aaKnown RBP6.52□□□□□ -1.37
VPS1YKR001C DPS1P04802 557 aaKnown RBP6.52□□□□□ -1.37
VPS1YKR001C CLC1P17891 233 aa6.52□□□□□ -1.37
VPS1YKR001C SEC20P28791 383 aa6.52□□□□□ -1.37
VPS1YKR001C NAB3P38996 802 aaKnown RBP RIP-Chip data6.52□□□□□ -1.37not detected
VPS1YKR001C RPT2P40327 437 aaKnown RBP6.52□□□□□ -1.37
VPS1YKR001C SEC9P40357 651 aa6.52□□□□□ -1.37
VPS1YKR001C YJR008WP47085 338 aa6.52□□□□□ -1.37
VPS1YKR001C NST1P53935 1240 aa6.52□□□□□ -1.37
VPS1YKR001C HPC2Q01448 625 aa6.52□□□□□ -1.37
VPS1YKR001C PUS5Q06244 254 aa6.52□□□□□ -1.37
VPS1YKR001C ATG13Q06628 738 aa6.52□□□□□ -1.37
VPS1YKR001C MLP1Q02455 1875 aaKnown RBP6.51□□□□□ -1.37
VPS1YKR001C GEF1P37020 779 aa6.51□□□□□ -1.37
VPS1YKR001C FAR11P53917 953 aa6.51□□□□□ -1.37
VPS1YKR001C YML020WQ03722 664 aa6.51□□□□□ -1.37
VPS1YKR001C AIM21P40563 679 aa6.5□□□□□ -1.37
VPS1YKR001C ZDS1P50111 915 aaKnown RBP6.5□□□□□ -1.37
VPS1YKR001C APL5Q08951 932 aaKnown RBP6.5□□□□□ -1.37
VPS1YKR001C PDR1P12383 1068 aa6.5□□□□□ -1.37
VPS1YKR001C GRX1P25373 110 aaKnown RBP6.5□□□□□ -1.37
VPS1YKR001C YKL222CP35995 705 aa6.5□□□□□ -1.37
VPS1YKR001C ERT1P38140 529 aa6.5□□□□□ -1.37
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms