RNA–Protein interactions for RNA: YGR143W

SKN1, Transcript of Protein involved in sphingolipid biosynthesis, yeastyeast

Gene SKN1, Length 2,316 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SKN1YGR143W TAF8Q03750 510 aa6.96□□□□□ -1.29
SKN1YGR143W YAH1Q12184 172 aaKnown RBP6.96□□□□□ -1.29
SKN1YGR143W YLL054CQ12244 843 aa6.96□□□□□ -1.29
SKN1YGR143W DAL5P15365 543 aa6.96□□□□□ -1.3
SKN1YGR143W DEP1P31385 405 aa6.96□□□□□ -1.3
SKN1YGR143W ATG36P46983 293 aa6.96□□□□□ -1.3
SKN1YGR143W PET111P08468 800 aa6.95□□□□□ -1.3
SKN1YGR143W CDC11P32458 415 aa6.95□□□□□ -1.3
SKN1YGR143W POL5P39985 1022 aaKnown RBP6.95□□□□□ -1.3
SKN1YGR143W PAP2P53632 584 aaKnown RBP6.95□□□□□ -1.3
SKN1YGR143W BMS1Q08965 1183 aaKnown RBP6.95□□□□□ -1.3
SKN1YGR143W HAA1Q12753 694 aaKnown RBP6.95□□□□□ -1.3
SKN1YGR143W TAF13P11747 167 aa6.94□□□□□ -1.3
SKN1YGR143W ROX1P25042 368 aa6.94□□□□□ -1.3
SKN1YGR143W ESL2P36168 1195 aa6.94□□□□□ -1.3
SKN1YGR143W VPS72Q03388 795 aa6.94□□□□□ -1.3
SKN1YGR143W RCM1P53972 490 aa6.93□□□□□ -1.3
SKN1YGR143W REB1P21538 810 aa6.93□□□□□ -1.3
SKN1YGR143W YPP1P46951 817 aa6.93□□□□□ -1.3
SKN1YGR143W AIM20P40451 204 aa6.92□□□□□ -1.3
SKN1YGR143W TY4B-HP0C2J7 1802 aa6.92□□□□□ -1.3
SKN1YGR143W TY4B-JP47024 1803 aa6.92□□□□□ -1.3
SKN1YGR143W RAD51P25454 400 aa6.92□□□□□ -1.3
SKN1YGR143W MED8P38304 223 aa6.92□□□□□ -1.3
SKN1YGR143W ALD3P54114 506 aa6.92□□□□□ -1.3
SKN1YGR143W RRP15Q06511 250 aaPredicted RBP6.92□□□□□ -1.3
SKN1YGR143W RRP5Q05022 1729 aaKnown RBP6.91□□□□□ -1.3
SKN1YGR143W CPS1P27614 576 aa6.91□□□□□ -1.3
SKN1YGR143W PPH3P32345 308 aa6.91□□□□□ -1.3
SKN1YGR143W RPC82P32349 654 aa6.91□□□□□ -1.3
SKN1YGR143W SLN1P39928 1220 aaPredicted RBP6.9□□□□□ -1.3
SKN1YGR143W HOS4P40480 1083 aa6.9□□□□□ -1.3
SKN1YGR143W VID30P53076 958 aa6.9□□□□□ -1.3
SKN1YGR143W HSC82P15108 705 aaKnown RBP6.9□□□□□ -1.31
SKN1YGR143W CFT2Q12102 859 aaPredicted RBP6.9□□□□□ -1.31
SKN1YGR143W SRP54P20424 541 aaKnown RBP6.89□□□□□ -1.31
SKN1YGR143W ECM1P39715 212 aa6.89□□□□□ -1.31
SKN1YGR143W ERV41Q04651 352 aa6.89□□□□□ -1.31
SKN1YGR143W ENT1Q12518 454 aa6.89□□□□□ -1.31
SKN1YGR143W GLN1P32288 370 aaKnown RBP6.88□□□□□ -1.31
SKN1YGR143W YIL055CP40523 627 aaKnown RBP6.88□□□□□ -1.31
SKN1YGR143W KIP3P53086 805 aaKnown RBP6.88□□□□□ -1.31
SKN1YGR143W MTR4P47047 1073 aaKnown RBP6.88□□□□□ -1.31
SKN1YGR143W RCF1Q03713 159 aa6.88□□□□□ -1.31
SKN1YGR143W NOP56Q12460 504 aaKnown RBP RIP-Chip data6.88□□□□□ -1.31not detected
SKN1YGR143W SPE2P21182 396 aa6.87□□□□□ -1.31
SKN1YGR143W PIM1P36775 1133 aa6.87□□□□□ -1.31
SKN1YGR143W NFI1Q12216 726 aa6.87□□□□□ -1.31
SKN1YGR143W YVC1Q12324 675 aa6.87□□□□□ -1.31
SKN1YGR143W YRF1-2P40105 1681 aa6.87□□□□□ -1.31
SKN1YGR143W ASF1P32447 279 aa6.87□□□□□ -1.31
SKN1YGR143W ENV9Q08651 330 aa6.87□□□□□ -1.31
SKN1YGR143W VPS5Q92331 675 aa6.86□□□□□ -1.31
SKN1YGR143W SEC20P28791 383 aa6.85□□□□□ -1.31
SKN1YGR143W YMR124WP39523 943 aaKnown RBP6.85□□□□□ -1.31
SKN1YGR143W DJP1P40564 432 aa6.85□□□□□ -1.31
SKN1YGR143W BDP1P46678 594 aa6.85□□□□□ -1.31
SKN1YGR143W NAB3P38996 802 aaKnown RBP RIP-Chip data6.85□□□□□ -1.31not detected
SKN1YGR143W IMH1Q06704 911 aaKnown RBP6.85□□□□□ -1.31
SKN1YGR143W YLR419WQ06698 1435 aaKnown RBP6.84□□□□□ -1.31
SKN1YGR143W PRP45P28004 379 aaPredicted RBP6.84□□□□□ -1.31
SKN1YGR143W DSF2P38213 736 aa6.84□□□□□ -1.31
SKN1YGR143W GGA1Q06336 557 aa6.84□□□□□ -1.31
SKN1YGR143W PSK1P31374 1356 aa6.84□□□□□ -1.31
SKN1YGR143W JSN1P47135 1091 aaKnown RBP RIP-Chip data6.84□□□□□ -1.31not detected
SKN1YGR143W TY4B-PA0A0B7P3V8 1104 aa6.83□□□□□ -1.32
SKN1YGR143W PHO87P25360 923 aa6.83□□□□□ -1.32
SKN1YGR143W RIM101P33400 625 aa6.83□□□□□ -1.32
SKN1YGR143W ADE6P38972 1358 aaKnown RBP6.83□□□□□ -1.32
SKN1YGR143W PUP2P32379 260 aa6.83□□□□□ -1.32
SKN1YGR143W RSC1P53236 928 aa6.83□□□□□ -1.32
SKN1YGR143W CEF1Q03654 590 aaPredicted RBP6.83□□□□□ -1.32
SKN1YGR143W PSR1Q07800 427 aa6.83□□□□□ -1.32
SKN1YGR143W LAM6Q08001 693 aa6.83□□□□□ -1.32
SKN1YGR143W SWI3P32591 825 aa6.82□□□□□ -1.32
SKN1YGR143W TPS3P38426 1054 aaKnown RBP6.82□□□□□ -1.32
SKN1YGR143W MGA2P40578 1113 aa6.82□□□□□ -1.32
SKN1YGR143W ITC1P53125 1264 aa6.82□□□□□ -1.32
SKN1YGR143W YOR389WQ08912 624 aa6.82□□□□□ -1.32
SKN1YGR143W CLB1P24868 471 aa6.81□□□□□ -1.32
SKN1YGR143W OSW7P43611 510 aa6.81□□□□□ -1.32
SKN1YGR143W PKH1Q03407 766 aa6.81□□□□□ -1.32
SKN1YGR143W COG8Q04632 607 aa6.81□□□□□ -1.32
SKN1YGR143W NOT3P06102 836 aaKnown RBP6.81□□□□□ -1.32
SKN1YGR143W PRP5P21372 849 aaPredicted RBP6.81□□□□□ -1.32
SKN1YGR143W YDR341CQ05506 607 aaKnown RBP6.81□□□□□ -1.32
SKN1YGR143W CLF1Q12309 687 aaPredicted RBP6.81□□□□□ -1.32
SKN1YGR143W LEU3P08638 886 aa6.8□□□□□ -1.32
SKN1YGR143W CHZ1P40019 153 aaPredicted RBP6.8□□□□□ -1.32
SKN1YGR143W NDL1Q06568 189 aa6.8□□□□□ -1.32
SKN1YGR143W YIL177CP40434 1758 aa6.79□□□□□ -1.32
SKN1YGR143W YJL225CP40889 1758 aa6.79□□□□□ -1.32
SKN1YGR143W CLN1P20437 546 aa6.79□□□□□ -1.32
SKN1YGR143W MSB3P48566 633 aaPredicted RBP6.79□□□□□ -1.32
SKN1YGR143W YML133CQ03099 1374 aa6.79□□□□□ -1.32
SKN1YGR143W YLL067CQ07888 1374 aa6.79□□□□□ -1.32
SKN1YGR143W YLL066CQ99208 1374 aa6.79□□□□□ -1.32
SKN1YGR143W LAM1P38851 1228 aa6.78□□□□□ -1.32
SKN1YGR143W SSP1P38871 571 aa6.78□□□□□ -1.32
SKN1YGR143W UBP10P53874 792 aaPredicted RBP6.78□□□□□ -1.32
Retrieved 100 of 5,963 RNA–protein pairs in 43.7 ms