RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP1	YDL122W	NPR2	P39923	615 aa		3.58	□□□□□ -1.84
UBP1	YDL122W	MRX12	P47084	519 aa		3.58	□□□□□ -1.84
UBP1	YDL122W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	3.58	□□□□□ -1.84	not detected
UBP1	YDL122W	ALD3	P54114	506 aa		3.58	□□□□□ -1.84
UBP1	YDL122W	VPS29	P38759	282 aa		3.58	□□□□□ -1.84
UBP1	YDL122W	SAM3	Q08986	587 aa		3.57	□□□□□ -1.84
UBP1	YDL122W	RIA1	P53893	1110 aa		3.56	□□□□□ -1.84
UBP1	YDL122W	LAM6	Q08001	693 aa		3.56	□□□□□ -1.84
UBP1	YDL122W	ETP1	P38748	585 aa	Known RBP	3.56	□□□□□ -1.84
UBP1	YDL122W	SRF1	Q12516	437 aa		3.56	□□□□□ -1.84
UBP1	YDL122W	RAD9	P14737	1309 aa		3.55	□□□□□ -1.84
UBP1	YDL122W	DBP1	P24784	617 aa	Known RBP	3.55	□□□□□ -1.84
UBP1	YDL122W	FKS3	Q04952	1785 aa		3.55	□□□□□ -1.84
UBP1	YDL122W	DOT5	P40553	215 aa		3.54	□□□□□ -1.84
UBP1	YDL122W	KRE5	P22023	1365 aa		3.54	□□□□□ -1.84
UBP1	YDL122W	PSK1	P31374	1356 aa		3.54	□□□□□ -1.84
UBP1	YDL122W	TRK1	P12685	1235 aa		3.54	□□□□□ -1.84
UBP1	YDL122W	SAP155	P43612	1002 aa		3.54	□□□□□ -1.84
UBP1	YDL122W	NUP192	P47054	1683 aa		3.54	□□□□□ -1.84
UBP1	YDL122W	RPS9B	P05755	195 aa	Known RBP	3.53	□□□□□ -1.84
UBP1	YDL122W	CTT1	P06115	562 aa		3.53	□□□□□ -1.84
UBP1	YDL122W	PTC4	P38089	393 aa		3.53	□□□□□ -1.84
UBP1	YDL122W	VMA1	P17255	1071 aa	Known RBP	3.52	□□□□□ -1.85
UBP1	YDL122W	STS1	P38637	319 aa		3.52	□□□□□ -1.85
UBP1	YDL122W	YER156C	P40093	338 aa	Known RBP	3.52	□□□□□ -1.85
UBP1	YDL122W	IES2	P40154	320 aa		3.51	□□□□□ -1.85
UBP1	YDL122W	FOX2	Q02207	900 aa	Known RBP	3.51	□□□□□ -1.85
UBP1	YDL122W	MAL31	P38156	614 aa		3.51	□□□□□ -1.85
UBP1	YDL122W	RCR1	P38212	213 aa		3.51	□□□□□ -1.85
UBP1	YDL122W	FPK1	P53739	893 aa		3.51	□□□□□ -1.85
UBP1	YDL122W	SQS1	P53866	767 aa	Known RBP	3.51	□□□□□ -1.85
UBP1	YDL122W	MHP1	P43638	1398 aa		3.51	□□□□□ -1.85
UBP1	YDL122W	RAS1	P01119	309 aa		3.5	□□□□□ -1.85
UBP1	YDL122W	PRP45	P28004	379 aa	Predicted RBP	3.49	□□□□□ -1.85
UBP1	YDL122W	ARH1	P48360	493 aa		3.49	□□□□□ -1.85
UBP1	YDL122W	YVH1	Q02256	364 aa	Known RBP	3.49	□□□□□ -1.85
UBP1	YDL122W	EAF6	P47128	113 aa		3.49	□□□□□ -1.85
UBP1	YDL122W	TY3B-I	Q7LHG5	1498 aa	Known RBP	3.48	□□□□□ -1.85
UBP1	YDL122W	HTA1	P04911	132 aa	Known RBP	3.48	□□□□□ -1.85
UBP1	YDL122W	HTA2	P04912	132 aa		3.48	□□□□□ -1.85
UBP1	YDL122W	TIF6	Q12522	245 aa	Known RBP	3.48	□□□□□ -1.85
UBP1	YDL122W	YLL066C	Q99208	1374 aa		3.48	□□□□□ -1.85
UBP1	YDL122W	YEL023C	P39992	682 aa		3.48	□□□□□ -1.85
UBP1	YDL122W	LEO1	P38439	464 aa		3.47	□□□□□ -1.85
UBP1	YDL122W	IFH1	P39520	1085 aa		3.47	□□□□□ -1.85
UBP1	YDL122W	MSN5	P52918	1224 aa		3.47	□□□□□ -1.85
UBP1	YDL122W	NCS6	P53088	359 aa		3.47	□□□□□ -1.85
UBP1	YDL122W	SPT23	P35210	1082 aa		3.46	□□□□□ -1.85
UBP1	YDL122W	YKL222C	P35995	705 aa		3.46	□□□□□ -1.85
UBP1	YDL122W	APC1	P53886	1748 aa		3.46	□□□□□ -1.86
UBP1	YDL122W	BUD21	Q08492	214 aa	Predicted RBP	3.46	□□□□□ -1.86
UBP1	YDL122W	TAF5	P38129	798 aa		3.45	□□□□□ -1.86
UBP1	YDL122W	EAR1	Q03212	550 aa		3.45	□□□□□ -1.86
UBP1	YDL122W	GYP5	Q12344	894 aa		3.45	□□□□□ -1.86
UBP1	YDL122W	PRP5	P21372	849 aa	Predicted RBP	3.45	□□□□□ -1.86
UBP1	YDL122W	RRT14	P40470	206 aa		3.45	□□□□□ -1.86
UBP1	YDL122W	PML39	Q03760	334 aa		3.45	□□□□□ -1.86
UBP1	YDL122W	MAK11	P20484	414 aa	Known RBP	3.44	□□□□□ -1.86
UBP1	YDL122W	YLR278C	Q05854	1341 aa		3.44	□□□□□ -1.86
UBP1	YDL122W	UTP22	P53254	1237 aa	Predicted RBP	3.43	□□□□□ -1.86
UBP1	YDL122W	RAM2	P29703	316 aa		3.43	□□□□□ -1.86
UBP1	YDL122W	YKR075C	P36155	307 aa		3.43	□□□□□ -1.86
UBP1	YDL122W	BUG1	Q12191	341 aa		3.43	□□□□□ -1.86
UBP1	YDL122W	TY4B-H	P0C2J7	1802 aa		3.43	□□□□□ -1.86
UBP1	YDL122W	TY4B-J	P47024	1803 aa		3.43	□□□□□ -1.86
UBP1	YDL122W	YRF1-3	P0CX14	1859 aa		3.43	□□□□□ -1.86
UBP1	YDL122W	YRF1-7	P0CX15	1859 aa		3.43	□□□□□ -1.86
UBP1	YDL122W	YRF1-6	P53819	1859 aa		3.43	□□□□□ -1.86
UBP1	YDL122W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	3.42	□□□□□ -1.86	RIP-Chip
UBP1	YDL122W	DCW1	P36091	449 aa		3.42	□□□□□ -1.86
UBP1	YDL122W	ERT1	P38140	529 aa		3.42	□□□□□ -1.86
UBP1	YDL122W	NYV1	Q12255	253 aa		3.42	□□□□□ -1.86
UBP1	YDL122W	YLR419W	Q06698	1435 aa	Known RBP	3.42	□□□□□ -1.86
UBP1	YDL122W	SLI15	P38283	698 aa		3.42	□□□□□ -1.86
UBP1	YDL122W	TYW1	Q08960	810 aa	Known RBP	3.42	□□□□□ -1.86
UBP1	YDL122W	TCB1	Q12466	1186 aa		3.42	□□□□□ -1.86
UBP1	YDL122W	RTG2	P32608	588 aa	Known RBP	3.41	□□□□□ -1.86
UBP1	YDL122W	TOS1	P38288	455 aa		3.41	□□□□□ -1.86
UBP1	YDL122W	COB	P00163	385 aa		3.4	□□□□□ -1.86
UBP1	YDL122W	RET1	P22276	1149 aa	Known RBP	3.4	□□□□□ -1.86
UBP1	YDL122W	VHR2	P40041	505 aa		3.4	□□□□□ -1.86
UBP1	YDL122W	GRE2	Q12068	342 aa	Known RBP	3.4	□□□□□ -1.86
UBP1	YDL122W	YMR084W	A2P2R3	262 aa		3.4	□□□□□ -1.87
UBP1	YDL122W	DLD1	P32891	587 aa		3.39	□□□□□ -1.87
UBP1	YDL122W	YKL133C	P36066	463 aa		3.39	□□□□□ -1.87
UBP1	YDL122W	KIN4	Q01919	800 aa		3.39	□□□□□ -1.87
UBP1	YDL122W	NOP53	Q12080	455 aa	Known RBP	3.39	□□□□□ -1.87
UBP1	YDL122W	GAR1	P28007	205 aa	Known RBP	3.39	□□□□□ -1.87
UBP1	YDL122W	GUT1	P32190	709 aa		3.39	□□□□□ -1.87
UBP1	YDL122W	PTC3	P34221	468 aa	Known RBP	3.39	□□□□□ -1.87
UBP1	YDL122W	EDS1	P38073	919 aa		3.39	□□□□□ -1.87
UBP1	YDL122W	BSD2	P38356	321 aa		3.39	□□□□□ -1.87
UBP1	YDL122W	COQ8	P27697	501 aa		3.38	□□□□□ -1.87
UBP1	YDL122W	GLC3	P32775	704 aa		3.38	□□□□□ -1.87
UBP1	YDL122W	ENP1	P38333	483 aa	Known RBP	3.38	□□□□□ -1.87
UBP1	YDL122W	YIL089W	P40500	205 aa		3.38	□□□□□ -1.87
UBP1	YDL122W	ATH1	P48016	1211 aa		3.38	□□□□□ -1.87
UBP1	YDL122W	YML082W	Q04533	649 aa	Known RBP	3.38	□□□□□ -1.87
UBP1	YDL122W	THS1	P04801	734 aa	Known RBP	3.38	□□□□□ -1.87
UBP1	YDL122W	HPC2	Q01448	625 aa		3.38	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms