RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	GDH2	P33327	1092 aa	Known RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	MTR2	P34232	184 aa	Known RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	TAF14	P35189	244 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	SOR1	P35497	357 aa	Known RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	RPC25	P35718	212 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	MIA40	P36046	403 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	YBR053C	P38235	358 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	PLB1	P39105	664 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	PCL6	P40038	420 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	CSM2	P40465	213 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	YPS6	P40583	537 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	HXT9	P40885	567 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	YHC3	P47040	408 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	ABM1	P47146	123 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	SLI1	P53304	468 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	DIA1	P54005	336 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	HXT11	P54862	567 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	NUP116	Q02630	1113 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	MUK1	Q02866	612 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	SSY1	Q03770	852 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	SOR2	Q07786	357 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	MLH3	Q12083	715 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	LPX1	Q12405	387 aa	Known RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	UBA3	Q99344	299 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	CYC1	P00044	109 aa	Predicted RBP	3.54	□□□□□ -1.84
NUP85	YJR042W	GPH1	P06738	902 aa	Known RBP	3.54	□□□□□ -1.84
NUP85	YJR042W	ATP10	P18496	279 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	DBR1	P24309	405 aa	Known RBP	3.54	□□□□□ -1.84
NUP85	YJR042W	RAD14	P28519	371 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	PRP21	P32524	280 aa	Predicted RBP	3.54	□□□□□ -1.84
NUP85	YJR042W	RPF2	P36160	344 aa	Known RBP	3.54	□□□□□ -1.84
NUP85	YJR042W	RIB1	P38066	345 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	LDB7	P38210	180 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	BIG1	P38813	335 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	SPL2	P38839	148 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	PRP39	P39682	629 aa	Known RBP	3.54	□□□□□ -1.84
NUP85	YJR042W	PHM8	P40025	321 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	GAT2	P40209	560 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	YFH7	P43591	353 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	LOH1	P47055	219 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	MMT1	Q03218	510 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	IZH1	Q03419	316 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	TAF12	Q03761	539 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	CTK1	Q03957	528 aa	Known RBP	3.54	□□□□□ -1.84
NUP85	YJR042W	UBX2	Q04228	584 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	IVY1	Q04934	453 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	GMC2	Q06201	188 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	FLO1	P32768	1537 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	PDE2	P06776	526 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	MAS1	P10507	462 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	SPO12	P17123	173 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	ZRC1	P20107	442 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	RAD57	P25301	460 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	3.54	□□□□□ -1.84	not detected
NUP85	YJR042W	RGT1	P32862	1170 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	ANS1	P38832	159 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	RIX1	P38883	763 aa	Predicted RBP	3.54	□□□□□ -1.84
NUP85	YJR042W	SPT20	P50875	604 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	ATG4	P53867	494 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	SPP2	Q02521	185 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	IRC4	Q03036	179 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	YDR109C	Q04585	715 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	MRPL35	Q06678	367 aa		3.54	□□□□□ -1.84
NUP85	YJR042W	NOP12	Q08208	459 aa	Known RBP	3.54	□□□□□ -1.84
NUP85	YJR042W	DNL4	Q08387	944 aa	Predicted RBP	3.54	□□□□□ -1.84
NUP85	YJR042W	DIA2	Q08496	732 aa	Predicted RBP	3.54	□□□□□ -1.84
NUP85	YJR042W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	3.54	□□□□□ -1.84	not detected
NUP85	YJR042W	FKS1	P38631	1876 aa	Known RBP	3.53	□□□□□ -1.84
NUP85	YJR042W	GSC2	P40989	1895 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	RPL24A	P04449	155 aa	Known RBP	3.53	□□□□□ -1.84
NUP85	YJR042W	RAD3	P06839	778 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	SNF3	P10870	884 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	SAR1	P20606	190 aa	Known RBP	3.53	□□□□□ -1.84
NUP85	YJR042W	PTP1	P25044	335 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	GAC1	P28006	793 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	ACH1	P32316	526 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	MSS51	P32335	436 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	GDA1	P32621	518 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	YKL097C	P34245	136 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	DOA1	P36037	715 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	PFS1	P38872	237 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	DSE1	P40077	573 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	LCP5	P40079	357 aa	Predicted RBP	3.53	□□□□□ -1.84
NUP85	YJR042W	SYG1	P40528	902 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	PHO86	P46956	311 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	TAF6	P53040	516 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	SCW11	P53189	542 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	ZPR1	P53303	486 aa	Known RBP	3.53	□□□□□ -1.84
NUP85	YJR042W	SDO1	Q07953	250 aa	Known RBP	3.53	□□□□□ -1.84
NUP85	YJR042W	YAP7	Q08182	245 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	NPC2	Q12408	173 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	TRM11	Q12463	433 aa		3.53	□□□□□ -1.84
NUP85	YJR042W	HIS5	P07172	385 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	PPR1	P07272	904 aa	Predicted RBP	3.52	□□□□□ -1.85
NUP85	YJR042W	YPK1	P12688	680 aa	Known RBP	3.52	□□□□□ -1.85
NUP85	YJR042W	STE4	P18851	423 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	PMA2	P19657	947 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	RRT12	P25381	491 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	SKT5	P34226	696 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	RPL32	P38061	130 aa	Known RBP	3.52	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 22 ms