RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 DALRD3Q5D0E6 543 aaKnown RBP18.6■□□□□ 0.57
PTPRF-209ENST00000438120 RCOR1Q9UKL0 485 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 PALLDQ8WX93 1383 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 DBN1Q16643 649 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 PARD3BQ8TEW8 1205 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 CDC25BP30305 580 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 CCT5P48643 541 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 PDE1CQ14123 709 aaPredicted RBP18.6■□□□□ 0.57
PTPRF-209ENST00000438120 CDO1Q16878 200 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 CIAPIN1Q6FI81 312 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 ATP6V1E2Q96A05 226 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 AP1M1Q9BXS5 423 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 KRT3P12035 628 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 LRRC4Q9HBW1 653 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 ANGPTL3Q9Y5C1 460 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 PBRM1Q86U86 1689 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 USP17L5A8MUK1 530 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 MCF2LO15068 1137 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 BNIP3LO60238 219 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 ECEL1O95672 775 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 RESTQ13127 1097 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 DNAJC17Q9NVM6 304 aaKnown RBP18.59■□□□□ 0.57
PTPRF-209ENST00000438120 OPHN1O60890 802 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 S100BP04271 92 aaPredicted RBP18.59■□□□□ 0.57
PTPRF-209ENST00000438120 ZNF853P0CG23 659 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 PEX3P56589 373 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 MRPS25P82663 173 aaKnown RBP18.59■□□□□ 0.57
PTPRF-209ENST00000438120 LRRD1A4D1F6 860 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 CASP1P29466 404 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 EPHA10Q5JZY3 1008 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 TRIM11Q96F44 468 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 TYW5A2RUC4 315 aaKnown RBP18.59■□□□□ 0.57
PTPRF-209ENST00000438120 NMT2O60551 498 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 LMNB2Q03252 620 aa18.59■□□□□ 0.57
PTPRF-209ENST00000438120 ABT1Q9ULW3 272 aaKnown RBP18.59■□□□□ 0.57
PTPRF-209ENST00000438120 SLC7A5Q01650 507 aa18.58■□□□□ 0.57
PTPRF-209ENST00000438120 PGRMC1O00264 195 aaKnown RBP18.58■□□□□ 0.57
PTPRF-209ENST00000438120 ATP1A3P13637 1013 aa18.58■□□□□ 0.57
PTPRF-209ENST00000438120 NPR1P16066 1061 aa18.58■□□□□ 0.57
PTPRF-209ENST00000438120 PRDX5P30044 214 aa18.58■□□□□ 0.57
PTPRF-209ENST00000438120 ARL4AP40617 200 aa18.58■□□□□ 0.57
PTPRF-209ENST00000438120 hCG_1984214I3L0E3 225 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 HIP1RO75146 1068 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 ZNF18P17022 549 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 ARHGEF18Q6ZSZ5 1173 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 ZNF713Q8N859 430 aaPredicted RBP18.58■□□□□ 0.56
PTPRF-209ENST00000438120 CFAP36Q96G28 342 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 CDHR1Q96JP9 859 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 MSTO1Q9BUK6 570 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 CCNE1P24864 410 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 ZNF394Q53GI3 561 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 NEO1Q92859 1461 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 CLGNO14967 610 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 ZNF772Q68DY9 489 aaPredicted RBP18.58■□□□□ 0.56
PTPRF-209ENST00000438120 PHLDB3Q6NSJ2 640 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 ZWILCHQ9H900 591 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 PCDHA13Q9Y5I0 950 aa18.58■□□□□ 0.56
PTPRF-209ENST00000438120 BBS5Q8N3I7 341 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 UBN1Q9NPG3 1134 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.57■□□□□ 0.56
PTPRF-209ENST00000438120 NEDD4P46934 1319 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 SRGAP2BP0DMP2 458 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 IL9RQ01113 521 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 RNF207Q6ZRF8 634 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 THNSL1Q8IYQ7 743 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 SIX6OS1Q8N1H7 587 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 RABGGTAQ92696 567 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 DDX27Q96GQ7 796 aaKnown RBP18.57■□□□□ 0.56
PTPRF-209ENST00000438120 SART1O43290 800 aaKnown RBP18.57■□□□□ 0.56
PTPRF-209ENST00000438120 FAM83BQ5T0W9 1011 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 STRBPQ96SI9 672 aaKnown RBP18.57■□□□□ 0.56
PTPRF-209ENST00000438120 BAG5Q9UL15 447 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 GDAQ9Y2T3 454 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 SPDYE2BA6NHP3 402 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 SPDYE6P0CI01 402 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 MSH2P43246 934 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 NECTIN1Q15223 517 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 BANK1Q8NDB2 785 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 MICAL1Q8TDZ2 1067 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 NDST4Q9H3R1 872 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 DHX9Q08211 1270 aaKnown RBP18.57■□□□□ 0.56
PTPRF-209ENST00000438120 MYO1EQ12965 1108 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 CUL4AQ13619 759 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 MAP3K21Q5TCX8 1036 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 TBC1D10CQ8IV04 446 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 CPSF3Q9UKF6 684 aaKnown RBP18.57■□□□□ 0.56
PTPRF-209ENST00000438120 G3BP2Q9UN86 482 aaKnown RBP18.57■□□□□ 0.56
PTPRF-209ENST00000438120 ATP7BP35670 1465 aa18.57■□□□□ 0.56
PTPRF-209ENST00000438120 GCC2Q8IWJ2 1684 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 RPF1Q9H9Y2 349 aaKnown RBP18.56■□□□□ 0.56
PTPRF-209ENST00000438120 POTEMA6NI47 508 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 MED7O43513 233 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 IREB2P48200 963 aaKnown RBP18.56■□□□□ 0.56
PTPRF-209ENST00000438120 EXOC8Q8IYI6 725 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 HSPH1Q92598 858 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 MED4Q9NPJ6 270 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 WDR91A4D1P6 747 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 NFX1Q12986 1120 aaKnown RBP18.56■□□□□ 0.56
PTPRF-209ENST00000438120 COA1Q9GZY4 146 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 THAP9Q9H5L6 903 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms