RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 SLC27A2O14975 620 aa11.93□□□□□ -0.5
NEDD8-202ENST00000396828 BAIAP3O94812 1187 aa11.93□□□□□ -0.5
NEDD8-202ENST00000396828 PSMA5P28066 241 aa11.93□□□□□ -0.5
NEDD8-202ENST00000396828 SEMA3FQ13275 785 aa11.93□□□□□ -0.5
NEDD8-202ENST00000396828 SKIV2LQ15477 1246 aaKnown RBP11.93□□□□□ -0.5
NEDD8-202ENST00000396828 FAM117BQ6P1L5 589 aa11.93□□□□□ -0.5
NEDD8-202ENST00000396828 CNKSR3Q6P9H4 555 aa11.93□□□□□ -0.5
NEDD8-202ENST00000396828 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.93□□□□□ -0.57e-16■■■□□ 19.1
NEDD8-202ENST00000396828 IGDCC4Q8TDY8 1250 aa11.93□□□□□ -0.5
NEDD8-202ENST00000396828 MTUS1Q9ULD2 1270 aa11.93□□□□□ -0.5
NEDD8-202ENST00000396828 PNMA6FA0A0J9YX94 578 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 GCOM1H8Y6P7 765 aaPredicted RBP11.92□□□□□ -0.5
NEDD8-202ENST00000396828 PPFIA4O75335 1185 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 GJB5O95377 273 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 POLR2MP0CAP2 368 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 KCNJ6P48051 423 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 PTK7Q13308 1070 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 MKRN4PQ13434 485 aaPredicted RBP11.92□□□□□ -0.5
NEDD8-202ENST00000396828 RABEP1Q15276 862 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 CCDC155Q8N6L0 562 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 GDPD5Q8WTR4 605 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 KCNB2Q92953 911 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 MYL10Q9BUA6 226 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 MAP3K20Q9NYL2 800 aaKnown RBP11.92□□□□□ -0.5
NEDD8-202ENST00000396828 RTEL1Q9NZ71 1219 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 SNX14Q9Y5W7 946 aa11.92□□□□□ -0.5
NEDD8-202ENST00000396828 BRWD1Q9NSI6 2320 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 KIF28PB7ZC32 967 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 TREHO43280 583 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 CCND2P30279 289 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 HOXC8P31273 242 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 THPOP40225 353 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 TRDNQ13061 729 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 WTAPQ15007 396 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 TSGA10IPQ3SY00 556 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 USP17L6PQ6QN14 398 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 SERINC5Q86VE9 423 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 MB21D2Q8IYB1 491 aaPredicted RBP11.91□□□□□ -0.5
NEDD8-202ENST00000396828 CMTR1Q8N1G2 835 aaKnown RBP11.91□□□□□ -0.5
NEDD8-202ENST00000396828 DBF4BQ8NFT6 615 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 IL17RAQ96F46 866 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 ZBED2Q9BTP6 218 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 KATNAL1Q9BW62 490 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 RNPEPQ9H4A4 650 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 SUGCTQ9HAC7 445 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 MLXIPQ9HAP2 919 aa11.91□□□□□ -0.5
NEDD8-202ENST00000396828 TRIOO75962 3097 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 ABHD14A-ACY1A0A1B0GW23 586 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 LINC01553A4QN01 128 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 SPATA31C2B4DYI2 1134 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 H3BRB1 525 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 GTPBP6O43824 516 aaPredicted RBP11.9□□□□□ -0.5
NEDD8-202ENST00000396828 ST18O60284 1047 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 LGR5O75473 907 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 LGALS2P05162 132 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 HMGB1P09429 215 aaKnown RBP11.9□□□□□ -0.5
NEDD8-202ENST00000396828 SMIM10L2AP0DMW4 78 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 SMIM10L2BP0DMW5 78 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 TGFB3P10600 412 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 COL9A1P20849 921 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 KCNV1Q6PIU1 500 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 CYFIP1Q7L576 1253 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 MICAL3Q7RTP6 2002 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 RALYLQ86SE5 291 aaKnown RBP11.9□□□□□ -0.5
NEDD8-202ENST00000396828 TRIM50Q86XT4 487 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 RASEFQ8IZ41 740 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 NCOA7Q8NI08 942 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 ATP6V0A1Q93050 837 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 JAKMIP1Q96N16 626 aaKnown RBP11.9□□□□□ -0.5
NEDD8-202ENST00000396828 INPP4AQ96PE3 977 aaPredicted RBP11.9□□□□□ -0.5
NEDD8-202ENST00000396828 RAD9AQ99638 391 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 KIF2CQ99661 725 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 TUT1Q9H6E5 874 aaKnown RBP11.9□□□□□ -0.5
NEDD8-202ENST00000396828 LY9Q9HBG7 655 aa11.9□□□□□ -0.5
NEDD8-202ENST00000396828 FRMPD4Q14CM0 1322 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 hCG_1642624A0A1W2PR95 340 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 C17orf102A2RUQ5 167 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 RSPH10B2B2RC85 870 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 MEIS2O14770 477 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 PLEKHA8P1O95397 391 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 RSPH10BP0C881 870 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 RXRAP19793 462 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 ICAM3P32942 547 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 IKBKEQ14164 716 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 BECN1Q14457 450 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 RAB11FIP4Q86YS3 637 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 SAMD3Q8N6K7 520 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 GPR20Q99678 358 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 C17orf80Q9BSJ5 609 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 TM6SF1Q9BZW5 370 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 TSPYL2Q9H2G4 693 aaPredicted RBP11.89□□□□□ -0.51
NEDD8-202ENST00000396828 SETD4Q9NVD3 440 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 CYP46A1Q9Y6A2 500 aa11.89□□□□□ -0.51
NEDD8-202ENST00000396828 SIP14410 1827 aa11.88□□□□□ -0.51
NEDD8-202ENST00000396828 ERICH2A1L162 156 aa11.88□□□□□ -0.51
NEDD8-202ENST00000396828 ATP9AO75110 1047 aa11.88□□□□□ -0.51
NEDD8-202ENST00000396828 PARNO95453 639 aaKnown RBP11.88□□□□□ -0.51
NEDD8-202ENST00000396828 CTSHP09668 335 aa11.88□□□□□ -0.51
NEDD8-202ENST00000396828 NEK4P51957 841 aa11.88□□□□□ -0.51
NEDD8-202ENST00000396828 ERVK-21P61565 698 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms