RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C PPR1P07272 904 aaPredicted RBP2.54□□□□□ -2
DNL4YOR005C WHI2P12611 486 aa2.54□□□□□ -2
DNL4YOR005C UBA1P22515 1024 aaKnown RBP2.54□□□□□ -2
DNL4YOR005C MRPL40P36534 297 aa2.54□□□□□ -2
DNL4YOR005C ICS2P38284 255 aa2.54□□□□□ -2
DNL4YOR005C IAH1P41734 238 aa2.54□□□□□ -2
DNL4YOR005C ELP2P42935 788 aa2.54□□□□□ -2
DNL4YOR005C TLG1Q03322 224 aa2.54□□□□□ -2
DNL4YOR005C YMR114CQ04471 368 aaKnown RBP2.54□□□□□ -2
DNL4YOR005C RNH1Q04740 348 aa2.54□□□□□ -2
DNL4YOR005C MSC3Q05812 728 aa2.54□□□□□ -2
DNL4YOR005C ECI1Q05871 280 aa2.54□□□□□ -2
DNL4YOR005C TEN1Q07921 160 aa2.54□□□□□ -2
DNL4YOR005C MED2Q12124 431 aa2.54□□□□□ -2
DNL4YOR005C YDR061WQ12298 539 aa2.54□□□□□ -2
DNL4YOR005C NCA2Q12374 616 aa2.54□□□□□ -2
DNL4YOR005C YLR278CQ05854 1341 aa2.54□□□□□ -2
DNL4YOR005C ARG81P05085 880 aa2.53□□□□□ -2
DNL4YOR005C ALG7P07286 448 aa2.53□□□□□ -2
DNL4YOR005C PRP2P20095 876 aaPredicted RBP2.53□□□□□ -2
DNL4YOR005C VPS17P32913 551 aa2.53□□□□□ -2
DNL4YOR005C ZTA1P38230 334 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C VPS45P38932 577 aa2.53□□□□□ -2
DNL4YOR005C VHS2P40463 436 aa2.53□□□□□ -2
DNL4YOR005C GVP36P40531 326 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C PTR3P43606 678 aa2.53□□□□□ -2
DNL4YOR005C AIM22P47051 409 aa2.53□□□□□ -2
DNL4YOR005C TMA22P47089 198 aaPredicted RBP2.53□□□□□ -2
DNL4YOR005C MNN10P50108 393 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C SHE10P53075 577 aa2.53□□□□□ -2
DNL4YOR005C ERG26P53199 349 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C ZPR1P53303 486 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C ASI1P54074 624 aa2.53□□□□□ -2
DNL4YOR005C SLG1P54867 378 aa2.53□□□□□ -2
DNL4YOR005C RPL22BP56628 122 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C YDR179W-AQ03983 463 aa2.53□□□□□ -2
DNL4YOR005C YLR177WQ06251 628 aa2.53□□□□□ -2
DNL4YOR005C FAS2P19097 1887 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C TUS1Q06412 1307 aa2.53□□□□□ -2
DNL4YOR005C ARG4P04076 463 aaPredicted RBP2.53□□□□□ -2
DNL4YOR005C PMA1P05030 918 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C SPS4P09937 338 aa2.53□□□□□ -2
DNL4YOR005C RAD14P28519 371 aa2.53□□□□□ -2
DNL4YOR005C NDI1P32340 513 aa2.53□□□□□ -2
DNL4YOR005C HIR2P32480 875 aa2.53□□□□□ -2
DNL4YOR005C RPL32P38061 130 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C FZO1P38297 855 aa2.53□□□□□ -2
DNL4YOR005C YMR147WP40218 223 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C SEC27P41811 889 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C ATG27P46989 271 aa2.53□□□□□ -2
DNL4YOR005C RPC17P47076 161 aa2.53□□□□□ -2
DNL4YOR005C NRD1P53617 575 aaKnown RBP RIP-Chip data2.53□□□□□ -2not detected
DNL4YOR005C UTP6Q02354 440 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C URH1Q04179 340 aa2.53□□□□□ -2
DNL4YOR005C PIG1Q06216 648 aa2.53□□□□□ -2
DNL4YOR005C NDL1Q06568 189 aa2.53□□□□□ -2
DNL4YOR005C TSR1Q07381 788 aaKnown RBP2.53□□□□□ -2
DNL4YOR005C YAP7Q08182 245 aa2.53□□□□□ -2
DNL4YOR005C LEA1Q08963 238 aaPredicted RBP2.53□□□□□ -2
DNL4YOR005C VAM3Q12241 283 aa2.53□□□□□ -2
DNL4YOR005C SFG1Q12507 346 aa2.53□□□□□ -2
DNL4YOR005C ZPS1Q12512 249 aa2.53□□□□□ -2
DNL4YOR005C SEY1Q99287 776 aa2.53□□□□□ -2
DNL4YOR005C CHO1P08456 276 aa2.52□□□□□ -2.01
DNL4YOR005C PRP6P19735 899 aaPredicted RBP2.52□□□□□ -2.01
DNL4YOR005C GRR1P24814 1151 aa2.52□□□□□ -2.01
DNL4YOR005C ILV6P25605 309 aaKnown RBP2.52□□□□□ -2.01
DNL4YOR005C PTC6P25646 442 aa2.52□□□□□ -2.01
DNL4YOR005C AIM3P38266 947 aaKnown RBP2.52□□□□□ -2.01
DNL4YOR005C SIP3P38717 1229 aa2.52□□□□□ -2.01
DNL4YOR005C FAD1P38913 306 aa2.52□□□□□ -2.01
DNL4YOR005C CCT2P39076 527 aaKnown RBP2.52□□□□□ -2.01
DNL4YOR005C GCD10P41814 478 aa2.52□□□□□ -2.01
DNL4YOR005C PMT6P42934 759 aa2.52□□□□□ -2.01
DNL4YOR005C GCN20P43535 752 aaKnown RBP2.52□□□□□ -2.01
DNL4YOR005C ECL1P48235 211 aa2.52□□□□□ -2.01
DNL4YOR005C YGL108CP53139 140 aa2.52□□□□□ -2.01
DNL4YOR005C RIM8P53179 542 aa2.52□□□□□ -2.01
DNL4YOR005C SMX3P54999 86 aaPredicted RBP2.52□□□□□ -2.01
DNL4YOR005C ABZ2Q03266 374 aa2.52□□□□□ -2.01
DNL4YOR005C ORM2Q06144 216 aa2.52□□□□□ -2.01
DNL4YOR005C DCS1Q06151 350 aa2.52□□□□□ -2.01
DNL4YOR005C RPS10AQ08745 105 aaPredicted RBP2.52□□□□□ -2.01
DNL4YOR005C OCA6Q12454 224 aa2.52□□□□□ -2.01
DNL4YOR005C MTR10Q99189 972 aa2.52□□□□□ -2.01
DNL4YOR005C CAR1P00812 333 aaKnown RBP2.52□□□□□ -2.01
DNL4YOR005C GPH1P06738 902 aaKnown RBP2.52□□□□□ -2.01
DNL4YOR005C CBP1P07252 654 aa2.52□□□□□ -2.01
DNL4YOR005C VPS1P21576 704 aaKnown RBP2.52□□□□□ -2.01
DNL4YOR005C YJU2P28320 278 aaPredicted RBP2.52□□□□□ -2.01
DNL4YOR005C PSO2P30620 661 aa2.52□□□□□ -2.01
DNL4YOR005C SIN4P32259 974 aa2.52□□□□□ -2.01
DNL4YOR005C MTR2P34232 184 aaKnown RBP2.52□□□□□ -2.01
DNL4YOR005C RPC37P36121 282 aa2.52□□□□□ -2.01
DNL4YOR005C GMH1P36125 273 aa2.52□□□□□ -2.01
DNL4YOR005C RCK2P38623 610 aa2.52□□□□□ -2.01
DNL4YOR005C ARG2P40360 574 aa2.52□□□□□ -2.01
DNL4YOR005C PCI8P40512 444 aa2.52□□□□□ -2.01
DNL4YOR005C TDA10P42938 290 aa2.52□□□□□ -2.01
DNL4YOR005C COP1P53622 1201 aaKnown RBP2.52□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 12 ms