RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 IVLP07476 585 aa21.32■■□□□ 1
VPS28-213ENST00000530983 AKR1B1P15121 316 aa21.32■■□□□ 1
VPS28-213ENST00000530983 GABPAQ06546 454 aa21.32■■□□□ 1
VPS28-213ENST00000530983 KCNMA1Q12791 1236 aa21.32■■□□□ 1
VPS28-213ENST00000530983 FAM182BQ5T319 152 aa21.32■■□□□ 1
VPS28-213ENST00000530983 HGSNATQ68CP4 663 aa21.32■■□□□ 1
VPS28-213ENST00000530983 FOXR1Q6PIV2 292 aa21.32■■□□□ 1
VPS28-213ENST00000530983 AFAP1L1Q8TED9 768 aa21.32■■□□□ 1
VPS28-213ENST00000530983 HAS1Q92839 578 aa21.32■■□□□ 1
VPS28-213ENST00000530983 ALS2CR12Q96Q35 445 aa21.32■■□□□ 1
VPS28-213ENST00000530983 LRRC1Q9BTT6 524 aa21.32■■□□□ 1
VPS28-213ENST00000530983 GPCPD1Q9NPB8 672 aa21.32■■□□□ 1
VPS28-213ENST00000530983 ARFGEF1Q9Y6D6 1849 aa21.32■■□□□ 1
VPS28-213ENST00000530983 IGKV6D-41A0A0C4DH26 115 aa21.32■■□□□ 1
VPS28-213ENST00000530983 MAGEA1P43355 309 aa21.32■■□□□ 1
VPS28-213ENST00000530983 GFPT1Q06210 699 aaPredicted RBP21.32■■□□□ 1
VPS28-213ENST00000530983 COASYQ13057 564 aa21.32■■□□□ 1
VPS28-213ENST00000530983 CRY2Q49AN0 593 aa21.32■■□□□ 1
VPS28-213ENST00000530983 SLF2Q8IX21 1173 aa21.32■■□□□ 1
VPS28-213ENST00000530983 PROM2Q8N271 834 aa21.32■■□□□ 1
VPS28-213ENST00000530983 GJA10Q969M2 543 aa21.32■■□□□ 1
VPS28-213ENST00000530983 TSG101Q99816 390 aa21.32■■□□□ 1
VPS28-213ENST00000530983 CRACR2AQ9BSW2 395 aa21.32■■□□□ 1
VPS28-213ENST00000530983 LRRC27Q9C0I9 530 aa21.32■■□□□ 1
VPS28-213ENST00000530983 JMJD4Q9H9V9 463 aa21.32■■□□□ 1
VPS28-213ENST00000530983 DMGDHQ9UI17 866 aaKnown RBP21.32■■□□□ 1
VPS28-213ENST00000530983 FAM184BQ9ULE4 1060 aa21.32■■□□□ 1
VPS28-213ENST00000530983 DAGLAQ9Y4D2 1042 aa21.32■■□□□ 1
VPS28-213ENST00000530983 HYOU1Q9Y4L1 999 aa21.32■■□□□ 1
VPS28-213ENST00000530983 TCP1P17987 556 aaKnown RBP21.31■■□□□ 1
VPS28-213ENST00000530983 HOXA7P31268 230 aaPredicted RBP21.31■■□□□ 1
VPS28-213ENST00000530983 CXCR5P32302 372 aa21.31■■□□□ 1
VPS28-213ENST00000530983 CLK2P49760 499 aaKnown RBP21.31■■□□□ 1
VPS28-213ENST00000530983 LRRC31Q6UY01 552 aa21.31■■□□□ 1
VPS28-213ENST00000530983 MYOCDQ8IZQ8 938 aa21.31■■□□□ 1
VPS28-213ENST00000530983 ANKRD13CQ8N6S4 541 aa21.31■■□□□ 1
VPS28-213ENST00000530983 PSMB7Q99436 277 aa21.31■■□□□ 1
VPS28-213ENST00000530983 EDEM3Q9BZQ6 932 aa21.31■■□□□ 1
VPS28-213ENST00000530983 EFCC1Q9HA90 598 aa21.31■■□□□ 1
VPS28-213ENST00000530983 NOP2P46087 812 aaKnown RBP21.3■■□□□ 1
VPS28-213ENST00000530983 CCDC70Q6NSX1 233 aa21.3■■□□□ 1
VPS28-213ENST00000530983 CERKQ8TCT0 537 aa21.3■■□□□ 1
VPS28-213ENST00000530983 MTMR8Q96EF0 704 aa21.3■■□□□ 1
VPS28-213ENST00000530983 SMARCAL1Q9NZC9 954 aa21.3■■□□□ 1
VPS28-213ENST00000530983 EHD2Q9NZN4 543 aa21.3■■□□□ 1
VPS28-213ENST00000530983 POLLQ9UGP5 575 aa21.3■■□□□ 1
VPS28-213ENST00000530983 DDX25Q9UHL0 483 aaKnown RBP21.3■■□□□ 1
VPS28-213ENST00000530983 PNMA6FA0A0J9YX94 578 aa21.3■■□□□ 1
VPS28-213ENST00000530983 SSU72P8A0A1W2PR75 194 aa21.3■■□□□ 1
VPS28-213ENST00000530983 PICALMQ13492 652 aa21.3■■□□□ 1
VPS28-213ENST00000530983 PPP1R18Q6NYC8 613 aa21.3■■□□□ 1
VPS28-213ENST00000530983 DPP8Q6V1X1 898 aaPredicted RBP21.3■■□□□ 1
VPS28-213ENST00000530983 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.3■■□□□ 1
VPS28-213ENST00000530983 CACNA2D4Q7Z3S7 1137 aa21.3■■□□□ 1
VPS28-213ENST00000530983 ADGRF4Q8IZF3 695 aa21.3■■□□□ 1
VPS28-213ENST00000530983 TANGO6Q9C0B7 1094 aa21.3■■□□□ 1
VPS28-213ENST00000530983 COL4A3BPQ9Y5P4 624 aa21.3■■□□□ 1
VPS28-213ENST00000530983 NCK2O43639 380 aa21.29■■□□□ 1
VPS28-213ENST00000530983 SLC1A4P43007 532 aa21.29■■□□□ 1
VPS28-213ENST00000530983 RASSF7Q02833 373 aa21.29■■□□□ 1
VPS28-213ENST00000530983 ZNF543Q08ER8 600 aa21.29■■□□□ 1
VPS28-213ENST00000530983 GOLGA6L1Q8N7Z2 621 aa21.29■■□□□ 1
VPS28-213ENST00000530983 TBC1D22AQ8WUA7 517 aa21.29■■□□□ 1
VPS28-213ENST00000530983 RUBCNQ92622 972 aa21.29■■□□□ 1
VPS28-213ENST00000530983 TLR10Q9BXR5 811 aa21.29■■□□□ 1
VPS28-213ENST00000530983 FGFBP2Q9BYJ0 223 aa21.29■■□□□ 1
VPS28-213ENST00000530983 NOL4O94818 638 aa21.29■■□□□ 1
VPS28-213ENST00000530983 FKBP3Q00688 224 aaKnown RBP21.29■■□□□ 1
VPS28-213ENST00000530983 FAM196AQ6ZSG2 479 aa21.29■■□□□ 1
VPS28-213ENST00000530983 RBAK-RBAKDNI3L0D1 243 aa21.28■■□□□ 1
VPS28-213ENST00000530983 TLR2O60603 784 aa21.28■■□□□ 1
VPS28-213ENST00000530983 MRPS25P82663 173 aaKnown RBP21.28■■□□□ 1
VPS28-213ENST00000530983 TBC1D16Q8TBP0 767 aa21.28■■□□□ 1
VPS28-213ENST00000530983 NLRC4Q9NPP4 1024 aa21.28■■□□□ 1
VPS28-213ENST00000530983 PANK4Q9NVE7 773 aa21.28■■□□□ 1
VPS28-213ENST00000530983 CEP72Q9P209 647 aa21.28■■□□□ 1
VPS28-213ENST00000530983 GOLGA6BA6NDN3 693 aa21.28■■□□□ 1
VPS28-213ENST00000530983 TRAF5O00463 557 aa21.28■■□□□ 1
VPS28-213ENST00000530983 MATR3P43243 847 aaKnown RBP eCLIP21.28■■□□□ 1
VPS28-213ENST00000530983 SEPT2Q15019 361 aa21.28■■□□□ 1
VPS28-213ENST00000530983 FAM26FQ5R3K3 315 aa21.28■■□□□ 1
VPS28-213ENST00000530983 KLHDC7AQ5VTJ3 777 aa21.28■■□□□ 1
VPS28-213ENST00000530983 TTBK2Q6IQ55 1244 aa21.28■■□□□ 1
VPS28-213ENST00000530983 ARHGAP27Q6ZUM4 889 aa21.28■■□□□ 1
VPS28-213ENST00000530983 TTLL1O95922 423 aa21.27■■□□□ 1
VPS28-213ENST00000530983 SLC7A5Q01650 507 aa21.27■■□□□ 1
VPS28-213ENST00000530983 TDRD12Q587J7 1177 aaKnown RBP21.27■■□□□ 1
VPS28-213ENST00000530983 HAUS3Q68CZ6 603 aa21.27■■□□□ 1
VPS28-213ENST00000530983 CUL5Q93034 780 aa21.27■■□□□ 1
VPS28-213ENST00000530983 DDX4Q9NQI0 724 aaKnown RBP21.27■■□□□ 1
VPS28-213ENST00000530983 ATAD5Q96QE3 1844 aa21.27■■□□□ 1
VPS28-213ENST00000530983 MYH4Q9Y623 1939 aa21.27■■□□□ 1
VPS28-213ENST00000530983 BUB1O43683 1085 aa21.27■□□□□ 0.99
VPS28-213ENST00000530983 CCDC40Q4G0X9 1142 aa21.27■□□□□ 0.99
VPS28-213ENST00000530983 HYIQ5T013 277 aa21.27■□□□□ 0.99
VPS28-213ENST00000530983 FAM83BQ5T0W9 1011 aa21.27■□□□□ 0.99
VPS28-213ENST00000530983 CCDC181Q5TID7 509 aa21.27■□□□□ 0.99
VPS28-213ENST00000530983 SND1Q7KZF4 910 aaKnown RBP eCLIP21.27■□□□□ 0.99
VPS28-213ENST00000530983 RNF10Q8N5U6 811 aaKnown RBP21.27■□□□□ 0.99
VPS28-213ENST00000530983 NOX5Q96PH1 765 aa21.27■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms