RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeastyeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSM4YIL030C SNX41Q04053 625 aa3.46□□□□□ -1.85
SSM4YIL030C YLR352WQ06479 807 aa3.46□□□□□ -1.85
SSM4YIL030C YOR385WQ08909 290 aa3.46□□□□□ -1.85
SSM4YIL030C RUP1Q12242 671 aa3.46□□□□□ -1.85
SSM4YIL030C MHT1Q12525 324 aa3.46□□□□□ -1.85
SSM4YIL030C COX5AP00424 153 aa3.46□□□□□ -1.86
SSM4YIL030C NUP2P32499 720 aa3.46□□□□□ -1.86
SSM4YIL030C DOM34P33309 386 aa3.46□□□□□ -1.86
SSM4YIL030C PTC1P35182 281 aa3.46□□□□□ -1.86
SSM4YIL030C FET3P38993 636 aa3.46□□□□□ -1.86
SSM4YIL030C EDC3P39998 551 aaKnown RBP3.46□□□□□ -1.86
SSM4YIL030C THO1P40040 218 aaKnown RBP3.46□□□□□ -1.86
SSM4YIL030C PSF2P40359 213 aa3.46□□□□□ -1.86
SSM4YIL030C IME4P41833 600 aa3.46□□□□□ -1.86
SSM4YIL030C DUS1P53759 423 aaKnown RBP3.46□□□□□ -1.86
SSM4YIL030C ARA2Q04212 335 aa3.46□□□□□ -1.86
SSM4YIL030C MDY2Q12285 212 aa3.46□□□□□ -1.86
SSM4YIL030C YPR015CQ12531 247 aa3.46□□□□□ -1.86
SSM4YIL030C YBL029C-AQ3E756 94 aa3.46□□□□□ -1.86
SSM4YIL030C ARP2P32381 391 aaKnown RBP3.46□□□□□ -1.86
SSM4YIL030C SUR1P33300 382 aa3.46□□□□□ -1.86
SSM4YIL030C MRPL17P36528 281 aa3.46□□□□□ -1.86
SSM4YIL030C BUR6P40096 142 aa3.46□□□□□ -1.86
SSM4YIL030C HOS2P53096 452 aaPredicted RBP3.46□□□□□ -1.86
SSM4YIL030C FPK1P53739 893 aa3.46□□□□□ -1.86
SSM4YIL030C EAR1Q03212 550 aa3.46□□□□□ -1.86
SSM4YIL030C RCL1Q08096 367 aaPredicted RBP3.46□□□□□ -1.86
SSM4YIL030C CBC2Q08920 208 aaKnown RBP RIP-Chip data3.46□□□□□ -1.86not detected
SSM4YIL030C RPN13O13563 156 aa3.45□□□□□ -1.86
SSM4YIL030C RPL17AP05740 184 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C PUT2P07275 575 aa3.45□□□□□ -1.86
SSM4YIL030C DPM1P14020 267 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C PBN1P25580 416 aa3.45□□□□□ -1.86
SSM4YIL030C PEX3P28795 441 aa3.45□□□□□ -1.86
SSM4YIL030C SAC1P32368 623 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C ASF2P32448 525 aaPredicted RBP3.45□□□□□ -1.86
SSM4YIL030C CDC13P32797 924 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C PEX6P33760 1030 aa3.45□□□□□ -1.86
SSM4YIL030C JEN1P36035 616 aa3.45□□□□□ -1.86
SSM4YIL030C YER184CP39961 794 aa3.45□□□□□ -1.86
SSM4YIL030C ATM1P40416 690 aa3.45□□□□□ -1.86
SSM4YIL030C QDR2P40474 542 aa3.45□□□□□ -1.86
SSM4YIL030C YFR018CP43599 363 aa3.45□□□□□ -1.86
SSM4YIL030C GUF1P46943 645 aa3.45□□□□□ -1.86
SSM4YIL030C RPL17BP46990 184 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C GLG2P47011 380 aa3.45□□□□□ -1.86
SSM4YIL030C NRD1P53617 575 aaKnown RBP RIP-Chip data3.45□□□□□ -1.86not detected
SSM4YIL030C NSE5Q03718 556 aa3.45□□□□□ -1.86
SSM4YIL030C ECM22Q05958 814 aaPredicted RBP3.45□□□□□ -1.86
SSM4YIL030C SDO1Q07953 250 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C ATG29Q12092 213 aa3.45□□□□□ -1.86
SSM4YIL030C NCR1Q12200 1170 aa3.45□□□□□ -1.86
SSM4YIL030C AHC1Q12433 566 aa3.45□□□□□ -1.86
SSM4YIL030C SAM1P10659 382 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C GAL2P13181 574 aa3.45□□□□□ -1.86
SSM4YIL030C ABF1P14164 731 aa3.45□□□□□ -1.86
SSM4YIL030C RPS5P26783 225 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C REF2P42073 533 aaPredicted RBP3.45□□□□□ -1.86
SSM4YIL030C TY4A-JP47023 414 aa3.45□□□□□ -1.86
SSM4YIL030C YNL018CP53976 612 aa3.45□□□□□ -1.86
SSM4YIL030C YDR514CQ04408 483 aa3.45□□□□□ -1.86
SSM4YIL030C RQC1Q05468 723 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C MDM36Q06820 579 aa3.45□□□□□ -1.86
SSM4YIL030C LDB17Q12342 491 aa3.45□□□□□ -1.86
SSM4YIL030C PNO1Q99216 274 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C POL30P15873 258 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C APA2P22108 325 aa3.45□□□□□ -1.86
SSM4YIL030C PTP1P25044 335 aa3.45□□□□□ -1.86
SSM4YIL030C RVS161P25343 265 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C PPZ1P26570 692 aa3.45□□□□□ -1.86
SSM4YIL030C MOT2P34909 587 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C YKL063CP35725 167 aa3.45□□□□□ -1.86
SSM4YIL030C MET12P46151 657 aa3.45□□□□□ -1.86
SSM4YIL030C PMT4P46971 762 aa3.45□□□□□ -1.86
SSM4YIL030C FAA4P47912 694 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C RNR4P49723 345 aaKnown RBP3.45□□□□□ -1.86
SSM4YIL030C KEL2P50090 882 aa3.45□□□□□ -1.86
SSM4YIL030C YPL071CQ02864 156 aa3.45□□□□□ -1.86
SSM4YIL030C PIR3Q03180 325 aa3.45□□□□□ -1.86
SSM4YIL030C COA4Q05809 96 aa3.45□□□□□ -1.86
SSM4YIL030C YOR338WQ99326 363 aa3.45□□□□□ -1.86
SSM4YIL030C CAP2P13517 287 aa3.44□□□□□ -1.86
SSM4YIL030C YSR3P23501 404 aa3.44□□□□□ -1.86
SSM4YIL030C SSD1P24276 1250 aaKnown RBP RIP-Chip data3.44□□□□□ -1.86not detected
SSM4YIL030C PGS1P25578 521 aa3.44□□□□□ -1.86
SSM4YIL030C PWP2P25635 923 aaKnown RBP3.44□□□□□ -1.86
SSM4YIL030C SHP1P34223 423 aa3.44□□□□□ -1.86
SSM4YIL030C APL3P38065 1025 aa3.44□□□□□ -1.86
SSM4YIL030C MRP21P38175 177 aa3.44□□□□□ -1.86
SSM4YIL030C BIT2P38346 545 aa3.44□□□□□ -1.86
SSM4YIL030C MXR1P40029 184 aa3.44□□□□□ -1.86
SSM4YIL030C SEC27P41811 889 aaKnown RBP3.44□□□□□ -1.86
SSM4YIL030C MAF1P41910 395 aa3.44□□□□□ -1.86
SSM4YIL030C QRI7P43122 407 aa3.44□□□□□ -1.86
SSM4YIL030C COS4P43542 379 aa3.44□□□□□ -1.86
SSM4YIL030C SAP4P53036 818 aa3.44□□□□□ -1.86
SSM4YIL030C GTF1P53260 183 aaPredicted RBP3.44□□□□□ -1.86
SSM4YIL030C ARR2Q06597 130 aa3.44□□□□□ -1.86
SSM4YIL030C YRM1Q12340 786 aa3.44□□□□□ -1.86
SSM4YIL030C MHF1Q3E835 90 aa3.44□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms