RNA–Protein interactions for RNA: YBR278W

DPB3, Transcript of Third-largest subunit of DNA polymerase II (DNA polymerase epsilon), yeast

Gene DPB3, Length 606 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DPB3	YBR278W	YPL107W	Q02873	248 aa		3.16	□□□□□ -1.9
DPB3	YBR278W	YDR286C	Q05530	114 aa		3.16	□□□□□ -1.9
DPB3	YBR278W	MDM30	Q05930	598 aa		3.16	□□□□□ -1.9
DPB3	YBR278W	PHO92	Q06390	306 aa		3.16	□□□□□ -1.9
DPB3	YBR278W	THI20	Q08224	551 aa		3.16	□□□□□ -1.9
DPB3	YBR278W	CUE5	Q08412	411 aa	Known RBP	3.16	□□□□□ -1.9
DPB3	YBR278W	PGC1	Q08959	321 aa		3.16	□□□□□ -1.9
DPB3	YBR278W	RKM1	Q08961	583 aa	Predicted RBP	3.16	□□□□□ -1.9
DPB3	YBR278W	HSP42	Q12329	375 aa		3.16	□□□□□ -1.9
DPB3	YBR278W	MTR10	Q99189	972 aa		3.16	□□□□□ -1.9
DPB3	YBR278W	YPT1	P01123	206 aa	Known RBP	3.15	□□□□□ -1.91
DPB3	YBR278W	RPL1A	P0CX43	217 aa	Known RBP	3.15	□□□□□ -1.91
DPB3	YBR278W	RPL1B	P0CX44	217 aa	Known RBP	3.15	□□□□□ -1.91
DPB3	YBR278W	SEC63	P14906	663 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	GLK1	P17709	500 aa	Known RBP	3.15	□□□□□ -1.91
DPB3	YBR278W	MGR1	P25573	417 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	UTR4	P32626	227 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	ECM15	P35195	104 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	GND1	P38720	489 aa	Known RBP	3.15	□□□□□ -1.91
DPB3	YBR278W	FAD1	P38913	306 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	FAU1	P40099	211 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	VHS2	P40463	436 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	RPS0B	P46654	252 aa	Known RBP	3.15	□□□□□ -1.91
DPB3	YBR278W	ATP22	P50273	684 aa	Predicted RBP	3.15	□□□□□ -1.91
DPB3	YBR278W	NCS2	P53923	493 aa	Predicted RBP	3.15	□□□□□ -1.91
DPB3	YBR278W	EOS1	P53938	366 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	STP1	Q00947	519 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	SLD5	Q03406	294 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	GLO2	Q05584	274 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	YLR456W	Q06199	204 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	AEP3	Q12089	606 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	NFI1	Q12216	726 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	RKM5	Q12367	367 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	FRE6	Q12473	712 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	SKS1	Q12505	502 aa		3.15	□□□□□ -1.91
DPB3	YBR278W	SCEI	P03882	235 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	RHB1	P25378	209 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	ACH1	P32316	526 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	PRP21	P32524	280 aa	Predicted RBP	3.14	□□□□□ -1.91
DPB3	YBR278W	FRE1	P32791	686 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	MIC60	P36112	540 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	ZTA1	P38230	334 aa	Known RBP	3.14	□□□□□ -1.91
DPB3	YBR278W	RFC3	P38629	340 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	YER130C	P39959	443 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	CSM2	P40465	213 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	SNM1	P40993	198 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	GUF1	P46943	645 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	MDV1	P47025	714 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	BNA3	P47039	444 aa	Known RBP	3.14	□□□□□ -1.91
DPB3	YBR278W	SAM50	P53969	484 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	MLH2	Q07980	695 aa		3.14	□□□□□ -1.91
DPB3	YBR278W	LSP1	Q12230	341 aa	Known RBP	3.14	□□□□□ -1.91
DPB3	YBR278W	CAR1	P00812	333 aa	Known RBP	3.13	□□□□□ -1.91
DPB3	YBR278W	LEU4	P06208	619 aa	Known RBP	3.13	□□□□□ -1.91
DPB3	YBR278W	YML002W	P0CF17	737 aa		3.13	□□□□□ -1.91
DPB3	YBR278W	KRR1	P25586	316 aa	Predicted RBP	3.13	□□□□□ -1.91
DPB3	YBR278W	FUN19	P28003	413 aa	Predicted RBP	3.13	□□□□□ -1.91
DPB3	YBR278W	ERG1	P32476	496 aa	Known RBP	3.13	□□□□□ -1.91
DPB3	YBR278W	VPS17	P32913	551 aa		3.13	□□□□□ -1.91
DPB3	YBR278W	SOR1	P35497	357 aa	Known RBP	3.13	□□□□□ -1.91
DPB3	YBR278W	OSH3	P38713	996 aa	Known RBP	3.13	□□□□□ -1.91
DPB3	YBR278W	YIR016W	P40572	265 aa		3.13	□□□□□ -1.91
DPB3	YBR278W	RHO5	P53879	331 aa	Known RBP	3.13	□□□□□ -1.91
DPB3	YBR278W	TDA7	P53882	636 aa	Predicted RBP	3.13	□□□□□ -1.91
DPB3	YBR278W	PRP42	Q03776	544 aa	Known RBP	3.13	□□□□□ -1.91
DPB3	YBR278W	YMR087W	Q04299	284 aa		3.13	□□□□□ -1.91
DPB3	YBR278W	RBA50	Q04418	439 aa		3.13	□□□□□ -1.91
DPB3	YBR278W	HSP31	Q04432	237 aa		3.13	□□□□□ -1.91
DPB3	YBR278W	MRPL1	Q04599	285 aa		3.13	□□□□□ -1.91
DPB3	YBR278W	SOR2	Q07786	357 aa		3.13	□□□□□ -1.91
DPB3	YBR278W	DSE3	Q08729	430 aa		3.13	□□□□□ -1.91
DPB3	YBR278W	COX3	P00420	269 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	AMD1	P15274	810 aa	Known RBP	3.12	□□□□□ -1.91
DPB3	YBR278W	SEC62	P21825	274 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	BUB3	P26449	341 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	POT1	P27796	417 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
DPB3	YBR278W	RAD24	P32641	659 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	ASC1	P38011	319 aa	Known RBP	3.12	□□□□□ -1.91
DPB3	YBR278W	ADH5	P38113	351 aa	Known RBP	3.12	□□□□□ -1.91
DPB3	YBR278W	MLH1	P38920	769 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	VPS52	P39904	641 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	YTA12	P40341	825 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	PCI8	P40512	444 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	SAS2	P40963	338 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	AZF1	P41696	914 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	YJR011C	P47086	261 aa	Predicted RBP	3.12	□□□□□ -1.91
DPB3	YBR278W	MLC1	P53141	149 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	YGL082W	P53155	381 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	TOF1	P53840	1238 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	DSL1	P53847	754 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	YMR254C	Q04838	102 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	BNA5	Q05979	453 aa		3.12	□□□□□ -1.91
DPB3	YBR278W	ADE4	P04046	510 aa	Known RBP	3.11	□□□□□ -1.91
DPB3	YBR278W	YFL068W	P0CX99	160 aa		3.11	□□□□□ -1.91
DPB3	YBR278W	YLL066W-A	P0CY00	160 aa		3.11	□□□□□ -1.91
DPB3	YBR278W	YLL067W-A	P0CY01	160 aa		3.11	□□□□□ -1.91
DPB3	YBR278W	PMR1	P13586	950 aa		3.11	□□□□□ -1.91
DPB3	YBR278W	ARO3	P14843	370 aa	Known RBP	3.11	□□□□□ -1.91
DPB3	YBR278W	RPI1	P23250	407 aa	Known RBP	3.11	□□□□□ -1.91
DPB3	YBR278W	PHO84	P25297	587 aa	Known RBP	3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms