RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W YDJ1P25491 409 aaKnown RBP8.8□□□□□ -1
PRP40YKL012W LAM6Q08001 693 aa8.8□□□□□ -1
PRP40YKL012W SLY41P22215 453 aa8.79□□□□□ -1
PRP40YKL012W SIS2P36024 562 aa8.79□□□□□ -1
PRP40YKL012W DPL1Q05567 589 aa8.78□□□□□ -1
PRP40YKL012W ENO1P00924 437 aaKnown RBP8.78□□□□□ -1
PRP40YKL012W RTF1P53064 558 aa8.78□□□□□ -1
PRP40YKL012W MRX10Q05648 414 aa8.78□□□□□ -1
PRP40YKL012W YNL115CP53925 644 aa8.77□□□□□ -1.01
PRP40YKL012W CDC3P32457 520 aaKnown RBP8.76□□□□□ -1.01
PRP40YKL012W RIM21P48565 533 aa8.76□□□□□ -1.01
PRP40YKL012W YRR1Q12172 810 aa8.76□□□□□ -1.01
PRP40YKL012W PUP1P25043 261 aa8.76□□□□□ -1.01
PRP40YKL012W MPC54Q08550 464 aa8.75□□□□□ -1.01
PRP40YKL012W MID1P41821 548 aa8.74□□□□□ -1.01
PRP40YKL012W SLD2P34252 453 aa8.73□□□□□ -1.01
PRP40YKL012W BUB1P41695 1021 aaKnown RBP RIP-Chip data8.73□□□□□ -1.01not detected
PRP40YKL012W YML083CQ04526 418 aa8.73□□□□□ -1.01
PRP40YKL012W PML39Q03760 334 aa8.72□□□□□ -1.01
PRP40YKL012W ISU2Q12056 156 aa8.72□□□□□ -1.01
PRP40YKL012W TRM1P15565 570 aaKnown RBP8.71□□□□□ -1.01
PRP40YKL012W ULI1P43604 169 aa8.71□□□□□ -1.02
PRP40YKL012W NAF1P53919 492 aaKnown RBP8.71□□□□□ -1.02
PRP40YKL012W TGL4P36165 910 aa8.7□□□□□ -1.02
PRP40YKL012W VNX1P42839 908 aa8.7□□□□□ -1.02
PRP40YKL012W YPP1P46951 817 aa8.7□□□□□ -1.02
PRP40YKL012W PUS6P53294 404 aa8.69□□□□□ -1.02
PRP40YKL012W YBL029C-AQ3E756 94 aa8.69□□□□□ -1.02
PRP40YKL012W TIF11P38912 153 aaKnown RBP8.68□□□□□ -1.02
PRP40YKL012W MRX12P47084 519 aa8.68□□□□□ -1.02
PRP40YKL012W SSF1P38789 453 aaPredicted RBP8.68□□□□□ -1.02
PRP40YKL012W PEP12P32854 288 aa8.67□□□□□ -1.02
PRP40YKL012W KEX2P13134 814 aa8.66□□□□□ -1.02
PRP40YKL012W YNL035CP53962 389 aaKnown RBP8.66□□□□□ -1.02
PRP40YKL012W IOC2Q12072 812 aa8.66□□□□□ -1.02
PRP40YKL012W NUD1P32336 851 aa8.66□□□□□ -1.02
PRP40YKL012W NMA111P53920 997 aa8.66□□□□□ -1.02
PRP40YKL012W PEX29Q03370 554 aa8.66□□□□□ -1.02
PRP40YKL012W MCM16Q12262 181 aa8.65□□□□□ -1.02
PRP40YKL012W RDS2P19541 446 aaKnown RBP8.64□□□□□ -1.03
PRP40YKL012W ERF2Q06551 359 aa8.64□□□□□ -1.03
PRP40YKL012W HAT1Q12341 374 aa8.63□□□□□ -1.03
PRP40YKL012W TBF1Q02457 562 aa8.63□□□□□ -1.03
PRP40YKL012W SPP1Q03012 353 aa8.62□□□□□ -1.03
PRP40YKL012W SEN54Q02825 467 aaPredicted RBP8.61□□□□□ -1.03
PRP40YKL012W NPL4P33755 580 aa8.6□□□□□ -1.03
PRP40YKL012W SEC61P32915 480 aa8.59□□□□□ -1.03
PRP40YKL012W ECM23Q02710 187 aa8.59□□□□□ -1.03
PRP40YKL012W HEM3P28789 327 aa8.58□□□□□ -1.04
PRP40YKL012W KTR7P40504 517 aa8.57□□□□□ -1.04
PRP40YKL012W YDL206WQ12424 762 aa8.57□□□□□ -1.04
PRP40YKL012W PDR1P12383 1068 aa8.56□□□□□ -1.04
PRP40YKL012W ISF1P32488 338 aa8.56□□□□□ -1.04
PRP40YKL012W RTG1P32607 177 aa8.56□□□□□ -1.04
PRP40YKL012W EMP47P43555 445 aa8.56□□□□□ -1.04
PRP40YKL012W ENV9Q08651 330 aa8.56□□□□□ -1.04
PRP40YKL012W GAL2P13181 574 aa8.56□□□□□ -1.04
PRP40YKL012W STR2P47164 639 aa8.56□□□□□ -1.04
PRP40YKL012W ISM1P48526 1002 aa8.56□□□□□ -1.04
PRP40YKL012W SNU71P53207 620 aaKnown RBP8.56□□□□□ -1.04
PRP40YKL012W NOP7P53261 605 aaKnown RBP8.56□□□□□ -1.04
PRP40YKL012W AGE1Q04412 482 aa8.56□□□□□ -1.04
PRP40YKL012W TUB4P53378 473 aa8.54□□□□□ -1.04
PRP40YKL012W LDB19Q12502 818 aa8.54□□□□□ -1.04
PRP40YKL012W RPA14P50106 137 aa8.53□□□□□ -1.04
PRP40YKL012W UBX7P38349 436 aa8.53□□□□□ -1.04
PRP40YKL012W FRA1Q07825 749 aa8.52□□□□□ -1.05
PRP40YKL012W AIM44Q99299 758 aa8.52□□□□□ -1.05
PRP40YKL012W RAM1P22007 431 aa8.51□□□□□ -1.05
PRP40YKL012W STM1P39015 273 aaKnown RBP8.51□□□□□ -1.05
PRP40YKL012W HAP5Q02516 242 aa8.51□□□□□ -1.05
PRP40YKL012W YPR097WQ06839 1073 aa8.51□□□□□ -1.05
PRP40YKL012W YDL129WQ07555 291 aa8.51□□□□□ -1.05
PRP40YKL012W TEC1P18412 486 aa8.5□□□□□ -1.05
PRP40YKL012W GCD11P32481 527 aaKnown RBP8.5□□□□□ -1.05
PRP40YKL012W TFG1P41895 735 aaPredicted RBP8.5□□□□□ -1.05
PRP40YKL012W STE20Q03497 939 aaKnown RBP8.5□□□□□ -1.05
PRP40YKL012W TY1A-DR4O74302 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-HP0C2I4 478 aaKnown RBP8.5□□□□□ -1.05
PRP40YKL012W TY1A-AP0CX57 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-PR1P0CX58 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-ORP0CX59 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-PR2P0CX60 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-DR5P0CX65 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-ER2P0CX66 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-GR3P0CX67 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-LR1P0CX68 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-MR2P0CX69 440 aa8.5□□□□□ -1.05
PRP40YKL012W SEC2P17065 759 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-JR2P47099 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-DR1Q03856 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-ML1Q04706 440 aaKnown RBP8.5□□□□□ -1.05
PRP40YKL012W TY1A-BRQ12217 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-NL2Q12470 440 aa8.5□□□□□ -1.05
PRP40YKL012W TY1A-GR2Q12485 440 aa8.5□□□□□ -1.05
PRP40YKL012W GUT2P32191 649 aa8.49□□□□□ -1.05
PRP40YKL012W RRN6P32786 894 aa8.49□□□□□ -1.05
PRP40YKL012W ATG3P40344 310 aa8.49□□□□□ -1.05
PRP40YKL012W FIG4P42837 879 aa8.49□□□□□ -1.05
PRP40YKL012W YBL113CQ7M4S9 792 aa8.49□□□□□ -1.05
Retrieved 100 of 5,963 RNA–protein pairs in 13 ms