RNA–Protein interactions for RNA: YJR001W

AVT1, Transcript of Vacuolar transporter, yeast

Gene AVT1, Length 1,809 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
AVT1	YJR001W	YOL098C	Q12496	1037 aa		5.49	□□□□□ -1.53
AVT1	YJR001W	MYO2	P19524	1574 aa	Known RBP	5.49	□□□□□ -1.53
AVT1	YJR001W	MAK16	P10962	306 aa	Predicted RBP	5.48	□□□□□ -1.53
AVT1	YJR001W	PUP1	P25043	261 aa		5.48	□□□□□ -1.53
AVT1	YJR001W	RRP14	P36080	434 aa	Known RBP	5.48	□□□□□ -1.53
AVT1	YJR001W	ENV11	P53246	860 aa		5.48	□□□□□ -1.53
AVT1	YJR001W	BRE1	Q07457	700 aa	Known RBP	5.48	□□□□□ -1.53
AVT1	YJR001W	YPR204W	Q08995	1032 aa		5.48	□□□□□ -1.53
AVT1	YJR001W	HSP82	P02829	709 aa	Known RBP	5.48	□□□□□ -1.53
AVT1	YJR001W	TPM2	P40414	161 aa		5.48	□□□□□ -1.53
AVT1	YJR001W	PLP2	Q12017	286 aa		5.48	□□□□□ -1.53
AVT1	YJR001W	SEC20	P28791	383 aa		5.47	□□□□□ -1.53
AVT1	YJR001W	RTG2	P32608	588 aa	Known RBP	5.47	□□□□□ -1.53
AVT1	YJR001W	ISW1	P38144	1129 aa		5.47	□□□□□ -1.53
AVT1	YJR001W	UBP10	P53874	792 aa	Predicted RBP	5.47	□□□□□ -1.53
AVT1	YJR001W	NOP53	Q12080	455 aa	Known RBP	5.47	□□□□□ -1.53
AVT1	YJR001W	ATE1	P16639	503 aa		5.46	□□□□□ -1.53
AVT1	YJR001W	TFG1	P41895	735 aa	Predicted RBP	5.46	□□□□□ -1.53
AVT1	YJR001W	TY4A-J	P47023	414 aa		5.46	□□□□□ -1.53
AVT1	YJR001W	MAG2	Q06436	670 aa	Known RBP	5.46	□□□□□ -1.53
AVT1	YJR001W	PPG1	P32838	368 aa		5.46	□□□□□ -1.54
AVT1	YJR001W	PEP1	P32319	1579 aa		5.45	□□□□□ -1.54
AVT1	YJR001W	GAL11	P19659	1081 aa		5.45	□□□□□ -1.54
AVT1	YJR001W	COQ8	P27697	501 aa		5.45	□□□□□ -1.54
AVT1	YJR001W	MSC6	Q08818	692 aa	Known RBP	5.45	□□□□□ -1.54
AVT1	YJR001W	MDS3	P53094	1487 aa		5.45	□□□□□ -1.54
AVT1	YJR001W	SKI3	P17883	1432 aa	Known RBP	5.44	□□□□□ -1.54
AVT1	YJR001W	SSB1	P11484	613 aa	Known RBP	5.44	□□□□□ -1.54
AVT1	YJR001W	SSB2	P40150	613 aa	Known RBP	5.44	□□□□□ -1.54
AVT1	YJR001W	AIM21	P40563	679 aa		5.44	□□□□□ -1.54
AVT1	YJR001W	NHA1	Q99271	985 aa		5.44	□□□□□ -1.54
AVT1	YJR001W	SPT2	P06843	333 aa	Predicted RBP	5.44	□□□□□ -1.54
AVT1	YJR001W	BIO2	P32451	375 aa		5.44	□□□□□ -1.54
AVT1	YJR001W	RGA2	Q06407	1009 aa		5.44	□□□□□ -1.54
AVT1	YJR001W	YOL057W	Q08225	711 aa		5.44	□□□□□ -1.54
AVT1	YJR001W	CIT2	P08679	460 aa		5.43	□□□□□ -1.54
AVT1	YJR001W	RPA135	P22138	1203 aa	Known RBP	5.43	□□□□□ -1.54
AVT1	YJR001W	KTR1	P27810	393 aa	Known RBP	5.43	□□□□□ -1.54
AVT1	YJR001W	POL32	P47110	350 aa		5.43	□□□□□ -1.54
AVT1	YJR001W	YDL121C	Q07541	149 aa		5.43	□□□□□ -1.54
AVT1	YJR001W	YBL113C	Q7M4S9	792 aa		5.43	□□□□□ -1.54
AVT1	YJR001W	YPK9	Q12697	1472 aa		5.42	□□□□□ -1.54
AVT1	YJR001W	RAD2	P07276	1031 aa		5.42	□□□□□ -1.54
AVT1	YJR001W	MRM1	P25270	412 aa		5.42	□□□□□ -1.54
AVT1	YJR001W	SPT16	P32558	1035 aa	Known RBP	5.42	□□□□□ -1.54
AVT1	YJR001W	TIF4632	P39936	914 aa	Known RBP	5.42	□□□□□ -1.54
AVT1	YJR001W	RPT2	P40327	437 aa	Known RBP	5.42	□□□□□ -1.54
AVT1	YJR001W	ALG12	P53730	551 aa		5.42	□□□□□ -1.54
AVT1	YJR001W	GRX4	P32642	244 aa		5.41	□□□□□ -1.54
AVT1	YJR001W	RTG3	P38165	486 aa		5.41	□□□□□ -1.54
AVT1	YJR001W	YBL036C	P38197	257 aa		5.41	□□□□□ -1.54
AVT1	YJR001W	UBP14	P38237	781 aa	Known RBP	5.41	□□□□□ -1.54
AVT1	YJR001W	BOI2	P39969	1040 aa		5.41	□□□□□ -1.54
AVT1	YJR001W	TLG1	Q03322	224 aa		5.41	□□□□□ -1.54
AVT1	YJR001W	VMA4	P22203	233 aa	Known RBP	5.41	□□□□□ -1.54
AVT1	YJR001W	MPP10	P47083	593 aa	Known RBP	5.41	□□□□□ -1.54
AVT1	YJR001W	SEC8	P32855	1065 aa		5.4	□□□□□ -1.54
AVT1	YJR001W	ERP5	P38819	212 aa		5.4	□□□□□ -1.54
AVT1	YJR001W	IOC3	P43596	787 aa		5.4	□□□□□ -1.54
AVT1	YJR001W	GIR2	Q03768	265 aa	Predicted RBP	5.4	□□□□□ -1.54
AVT1	YJR001W	TFC8	Q12308	588 aa		5.4	□□□□□ -1.54
AVT1	YJR001W	SRP40	P32583	406 aa	Predicted RBP	5.39	□□□□□ -1.55
AVT1	YJR001W	ENP1	P38333	483 aa	Known RBP	5.39	□□□□□ -1.55
AVT1	YJR001W	BBC1	P47068	1157 aa		5.39	□□□□□ -1.55
AVT1	YJR001W	YNL108C	P53929	270 aa		5.39	□□□□□ -1.55
AVT1	YJR001W	OYE2	Q03558	400 aa	Known RBP	5.39	□□□□□ -1.55
AVT1	YJR001W	JIP5	Q06214	492 aa	Predicted RBP	5.39	□□□□□ -1.55
AVT1	YJR001W	STB3	Q12427	513 aa		5.39	□□□□□ -1.55
AVT1	YJR001W	POL1	P13382	1468 aa		5.39	□□□□□ -1.55
AVT1	YJR001W	HO	P09932	586 aa		5.39	□□□□□ -1.55
AVT1	YJR001W	ERP2	P39704	215 aa		5.39	□□□□□ -1.55
AVT1	YJR001W	TMA64	Q04600	565 aa	Known RBP	5.39	□□□□□ -1.55
AVT1	YJR001W	SUP45	P12385	437 aa	Known RBP	5.38	□□□□□ -1.55
AVT1	YJR001W	MPE1	P35728	441 aa	Known RBP	5.38	□□□□□ -1.55
AVT1	YJR001W	SCC2	Q04002	1493 aa		5.37	□□□□□ -1.55
AVT1	YJR001W	TRL1	P09880	827 aa	Known RBP	5.37	□□□□□ -1.55
AVT1	YJR001W	ECM16	Q04217	1267 aa	Known RBP	5.37	□□□□□ -1.55
AVT1	YJR001W	WHI5	Q12416	295 aa		5.37	□□□□□ -1.55
AVT1	YJR001W	TGL4	P36165	910 aa		5.37	□□□□□ -1.55
AVT1	YJR001W	YHL050C	P38721	697 aa		5.37	□□□□□ -1.55
AVT1	YJR001W	YHR219W	P38900	624 aa		5.37	□□□□□ -1.55
AVT1	YJR001W	TCB2	P48231	1178 aa		5.37	□□□□□ -1.55
AVT1	YJR001W	POB3	Q04636	552 aa	Known RBP	5.37	□□□□□ -1.55
AVT1	YJR001W	YEL077C	Q3E7X8	1277 aa		5.37	□□□□□ -1.55
AVT1	YJR001W	STU1	P38198	1513 aa		5.36	□□□□□ -1.55
AVT1	YJR001W	YKL091C	P33324	310 aa	Known RBP	5.36	□□□□□ -1.55
AVT1	YJR001W	VAC8	P39968	578 aa		5.36	□□□□□ -1.55
AVT1	YJR001W	BUD6	P41697	788 aa		5.36	□□□□□ -1.55
AVT1	YJR001W	ALD3	P54114	506 aa		5.36	□□□□□ -1.55
AVT1	YJR001W	DNM1	P54861	757 aa		5.36	□□□□□ -1.55
AVT1	YJR001W	MRX10	Q05648	414 aa		5.36	□□□□□ -1.55
AVT1	YJR001W	ENO1	P00924	437 aa	Known RBP	5.35	□□□□□ -1.55
AVT1	YJR001W	RNA1	P11745	407 aa	Known RBP	5.35	□□□□□ -1.55
AVT1	YJR001W	KAR1	P11927	433 aa		5.35	□□□□□ -1.55
AVT1	YJR001W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	5.35	□□□□□ -1.55	not detected
AVT1	YJR001W	PPX1	P38698	397 aa		5.35	□□□□□ -1.55
AVT1	YJR001W	POL5	P39985	1022 aa	Known RBP	5.35	□□□□□ -1.55
AVT1	YJR001W	VPS27	P40343	622 aa	Known RBP	5.35	□□□□□ -1.55
AVT1	YJR001W	YDR090C	Q03193	310 aa		5.35	□□□□□ -1.55
AVT1	YJR001W	RPN4	Q03465	531 aa		5.35	□□□□□ -1.55

Retrieved 100 of 5,963 RNA–protein pairs in 8.6 ms