RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeastyeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIM1YIL123W YNR029CP53729 429 aaKnown RBP14.7□□□□□ -0.06
SIM1YIL123W YML133CQ03099 1374 aa14.69□□□□□ -0.06
SIM1YIL123W YLL067CQ07888 1374 aa14.69□□□□□ -0.06
SIM1YIL123W YLL066CQ99208 1374 aa14.69□□□□□ -0.06
SIM1YIL123W RCM1P53972 490 aa14.69□□□□□ -0.06
SIM1YIL123W MLP1Q02455 1875 aaKnown RBP14.69□□□□□ -0.06
SIM1YIL123W PRS1P32895 427 aaKnown RBP14.67□□□□□ -0.06
SIM1YIL123W PPH3P32345 308 aa14.66□□□□□ -0.06
SIM1YIL123W CPS1P27614 576 aa14.64□□□□□ -0.07
SIM1YIL123W IOC4Q04213 475 aa14.62□□□□□ -0.07
SIM1YIL123W YMR196WQ04336 1088 aa14.61□□□□□ -0.07
SIM1YIL123W YEF3P16521 1044 aaKnown RBP14.59□□□□□ -0.07
SIM1YIL123W USO1P25386 1790 aa14.58□□□□□ -0.07
SIM1YIL123W LEU2P04173 364 aaPredicted RBP14.58□□□□□ -0.08
SIM1YIL123W TRK1P12685 1235 aa14.55□□□□□ -0.08
SIM1YIL123W MTR4P47047 1073 aaKnown RBP14.54□□□□□ -0.08
SIM1YIL123W TAP42Q04372 366 aa14.52□□□□□ -0.08
SIM1YIL123W RPP0P05317 312 aaKnown RBP14.51□□□□□ -0.09
SIM1YIL123W PDI1P17967 522 aaKnown RBP14.49□□□□□ -0.09
SIM1YIL123W ADE6P38972 1358 aaKnown RBP14.49□□□□□ -0.09
SIM1YIL123W NOP2P40991 618 aaKnown RBP14.49□□□□□ -0.09
SIM1YIL123W THI12P42883 340 aa14.48□□□□□ -0.09
SIM1YIL123W THI5P43534 340 aa14.48□□□□□ -0.09
SIM1YIL123W THI11P47183 340 aa14.48□□□□□ -0.09
SIM1YIL123W PRP43P53131 767 aaKnown RBP14.48□□□□□ -0.09
SIM1YIL123W THI13Q07748 340 aa14.48□□□□□ -0.09
SIM1YIL123W KAR2P16474 682 aaKnown RBP14.45□□□□□ -0.1
SIM1YIL123W MIF2P35201 549 aa14.45□□□□□ -0.1
SIM1YIL123W GRX4P32642 244 aa14.44□□□□□ -0.1
SIM1YIL123W RTF1P53064 558 aa14.44□□□□□ -0.1
SIM1YIL123W VPS27P40343 622 aaKnown RBP14.43□□□□□ -0.1
SIM1YIL123W AUS1Q08409 1394 aa14.43□□□□□ -0.1
SIM1YIL123W YDL144CQ07589 356 aa14.42□□□□□ -0.1
SIM1YIL123W CDC45Q08032 650 aa14.42□□□□□ -0.1
SIM1YIL123W HIM1Q06674 414 aa14.41□□□□□ -0.1
SIM1YIL123W RRP46P53256 223 aaPredicted RBP14.4□□□□□ -0.1
SIM1YIL123W RPS24AP0CX31 135 aaKnown RBP14.39□□□□□ -0.11
SIM1YIL123W RPS24BP0CX32 135 aaKnown RBP14.39□□□□□ -0.11
SIM1YIL123W CSE4P36012 229 aa14.39□□□□□ -0.11
SIM1YIL123W SNF2P22082 1703 aa14.36□□□□□ -0.11
SIM1YIL123W RTR1P40084 226 aaPredicted RBP14.35□□□□□ -0.11
SIM1YIL123W MPP10P47083 593 aaKnown RBP14.33□□□□□ -0.11
SIM1YIL123W PAP2P53632 584 aaKnown RBP14.32□□□□□ -0.12
SIM1YIL123W RVB2Q12464 471 aaKnown RBP14.32□□□□□ -0.12
SIM1YIL123W YRB30P53107 440 aaPredicted RBP14.32□□□□□ -0.12
SIM1YIL123W GAS4Q08271 471 aa14.31□□□□□ -0.12
SIM1YIL123W RPO41P13433 1351 aaKnown RBP14.3□□□□□ -0.12
SIM1YIL123W SUI2P20459 304 aaKnown RBP14.3□□□□□ -0.12
SIM1YIL123W DPS1P04802 557 aaKnown RBP14.28□□□□□ -0.12
SIM1YIL123W PRD1P25375 712 aa14.28□□□□□ -0.12
SIM1YIL123W TY4B-HP0C2J7 1802 aa14.25□□□□□ -0.13
SIM1YIL123W TY4B-JP47024 1803 aa14.25□□□□□ -0.13
SIM1YIL123W THI22Q06490 572 aa14.24□□□□□ -0.13
SIM1YIL123W PTP3P40048 928 aa14.24□□□□□ -0.13
SIM1YIL123W SAP155P43612 1002 aa14.23□□□□□ -0.13
SIM1YIL123W PRP5P21372 849 aaPredicted RBP14.21□□□□□ -0.13
SIM1YIL123W NAB6Q03735 1134 aaKnown RBP RIP-Chip data14.2□□□□□ -0.14not detected
SIM1YIL123W BUB1P41695 1021 aaKnown RBP RIP-Chip data14.19□□□□□ -0.14not detected
SIM1YIL123W HEF3P53978 1044 aaKnown RBP14.19□□□□□ -0.14
SIM1YIL123W YRF1-2P40105 1681 aa14.19□□□□□ -0.14
SIM1YIL123W PRP45P28004 379 aaPredicted RBP14.18□□□□□ -0.14
SIM1YIL123W TPD3P31383 635 aa14.18□□□□□ -0.14
SIM1YIL123W AKL1P38080 1108 aaKnown RBP14.18□□□□□ -0.14
SIM1YIL123W FUN12P39730 1002 aaKnown RBP14.18□□□□□ -0.14
SIM1YIL123W APC1P53886 1748 aa14.17□□□□□ -0.14
SIM1YIL123W SLM3Q12093 417 aa14.16□□□□□ -0.14
SIM1YIL123W YRF1-4O13559 1382 aa14.16□□□□□ -0.14
SIM1YIL123W RTT109Q07794 436 aa14.15□□□□□ -0.14
SIM1YIL123W DSD1P53095 428 aa14.14□□□□□ -0.15
SIM1YIL123W MSB3P48566 633 aaPredicted RBP14.13□□□□□ -0.15
SIM1YIL123W YIL177CP40434 1758 aa14.13□□□□□ -0.15
SIM1YIL123W YJL225CP40889 1758 aa14.13□□□□□ -0.15
SIM1YIL123W SIR4P11978 1358 aa14.12□□□□□ -0.15
SIM1YIL123W RRP5Q05022 1729 aaKnown RBP14.11□□□□□ -0.15
SIM1YIL123W YNL050CP53952 270 aa14.1□□□□□ -0.15
SIM1YIL123W TFA1P36100 482 aa14.09□□□□□ -0.15
SIM1YIL123W RAD2P07276 1031 aa14.07□□□□□ -0.16
SIM1YIL123W NTH2P35172 780 aa14.07□□□□□ -0.16
SIM1YIL123W FPR3P38911 411 aaKnown RBP14.07□□□□□ -0.16
SIM1YIL123W TCB1Q12466 1186 aa14.07□□□□□ -0.16
SIM1YIL123W CTF4Q01454 927 aa14.07□□□□□ -0.16
SIM1YIL123W YFR006WP43590 535 aa14.06□□□□□ -0.16
SIM1YIL123W YIL092WP40497 633 aa14.05□□□□□ -0.16
SIM1YIL123W FKS3Q04952 1785 aa14.04□□□□□ -0.16
SIM1YIL123W MAM1P40065 302 aa14.04□□□□□ -0.16
SIM1YIL123W BUD27P43573 796 aaKnown RBP RIP-Chip data14.04□□□□□ -0.16not detected
SIM1YIL123W MAK21Q12176 1025 aaKnown RBP14.04□□□□□ -0.16
SIM1YIL123W URB1P34241 1764 aaKnown RBP14.04□□□□□ -0.16
SIM1YIL123W HSP104P31539 908 aaKnown RBP14.03□□□□□ -0.16
SIM1YIL123W XKS1P42826 600 aa14.03□□□□□ -0.16
SIM1YIL123W GYP7P48365 746 aa14.03□□□□□ -0.16
SIM1YIL123W ZDS1P50111 915 aaKnown RBP14.03□□□□□ -0.16
SIM1YIL123W AOS1Q06624 347 aa14.02□□□□□ -0.16
SIM1YIL123W RSF2P46974 1380 aa14.01□□□□□ -0.17
SIM1YIL123W DAL5P15365 543 aa13.99□□□□□ -0.17
SIM1YIL123W REB1P21538 810 aa13.99□□□□□ -0.17
SIM1YIL123W RCR1P38212 213 aa13.99□□□□□ -0.17
SIM1YIL123W RRT14P40470 206 aa13.99□□□□□ -0.17
SIM1YIL123W ENT1Q12518 454 aa13.98□□□□□ -0.17
SIM1YIL123W EDE1P34216 1381 aa13.98□□□□□ -0.17
Retrieved 100 of 5,963 RNA–protein pairs in 8 ms