RNA–Protein interactions for RNA: YDL154W

MSH5, Transcript of Protein of the MutS family, yeast

Gene MSH5, Length 2,706 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH5	YDL154W	YNL035C	P53962	389 aa	Known RBP	3.03	□□□□□ -1.92
MSH5	YDL154W	CDC73	Q06697	393 aa		3.03	□□□□□ -1.92
MSH5	YDL154W	TFB4	Q12004	338 aa		3.03	□□□□□ -1.92
MSH5	YDL154W	RGR1	P19263	1082 aa		3.02	□□□□□ -1.93
MSH5	YDL154W	GLN1	P32288	370 aa	Known RBP	3.02	□□□□□ -1.93
MSH5	YDL154W	MVP1	P40959	511 aa	Known RBP	3.02	□□□□□ -1.93
MSH5	YDL154W	NST1	P53935	1240 aa		3.02	□□□□□ -1.93
MSH5	YDL154W	PML39	Q03760	334 aa		3.02	□□□□□ -1.93
MSH5	YDL154W	TUM1	Q08686	304 aa	Known RBP	3.02	□□□□□ -1.93
MSH5	YDL154W	TYW1	Q08960	810 aa	Known RBP	3.02	□□□□□ -1.93
MSH5	YDL154W	NCR1	Q12200	1170 aa		3.02	□□□□□ -1.93
MSH5	YDL154W	YBL036C	P38197	257 aa		3.02	□□□□□ -1.93
MSH5	YDL154W	YJL007C	P47080	104 aa		3.02	□□□□□ -1.93
MSH5	YDL154W	RTG1	P32607	177 aa		3.01	□□□□□ -1.93
MSH5	YDL154W	YCF1	P39109	1515 aa	Known RBP	3.01	□□□□□ -1.93
MSH5	YDL154W	PKH3	Q03306	898 aa	Predicted RBP	3.01	□□□□□ -1.93
MSH5	YDL154W	DPL1	Q05567	589 aa		3.01	□□□□□ -1.93
MSH5	YDL154W	YRR1	Q12172	810 aa		3.01	□□□□□ -1.93
MSH5	YDL154W	MMP1	Q12372	583 aa		3.01	□□□□□ -1.93
MSH5	YDL154W	MID1	P41821	548 aa		3	□□□□□ -1.93
MSH5	YDL154W	PKC1	P24583	1151 aa		3	□□□□□ -1.93
MSH5	YDL154W	NPL4	P33755	580 aa		3	□□□□□ -1.93
MSH5	YDL154W	FPK1	P53739	893 aa		3	□□□□□ -1.93
MSH5	YDL154W	ARG8	P18544	423 aa		2.99	□□□□□ -1.93
MSH5	YDL154W	BCK2	P33306	851 aa		2.99	□□□□□ -1.93
MSH5	YDL154W	ESS1	P22696	170 aa		2.99	□□□□□ -1.93
MSH5	YDL154W	NIS1	P53939	407 aa		2.99	□□□□□ -1.93
MSH5	YDL154W	MPC54	Q08550	464 aa		2.99	□□□□□ -1.93
MSH5	YDL154W	ISU2	Q12056	156 aa		2.99	□□□□□ -1.93
MSH5	YDL154W	SEC61	P32915	480 aa		2.99	□□□□□ -1.93
MSH5	YDL154W	SLY41	P22215	453 aa		2.98	□□□□□ -1.93
MSH5	YDL154W	HST2	P53686	357 aa		2.98	□□□□□ -1.93
MSH5	YDL154W	IOC2	Q12072	812 aa		2.98	□□□□□ -1.93
MSH5	YDL154W	SCJ1	P25303	377 aa		2.98	□□□□□ -1.93
MSH5	YDL154W	BIM1	P40013	344 aa		2.98	□□□□□ -1.93
MSH5	YDL154W	YDL129W	Q07555	291 aa		2.98	□□□□□ -1.93
MSH5	YDL154W	ECM5	Q03214	1411 aa		2.97	□□□□□ -1.93
MSH5	YDL154W	KTR1	P27810	393 aa	Known RBP	2.97	□□□□□ -1.93
MSH5	YDL154W	NMA111	P53920	997 aa		2.97	□□□□□ -1.93
MSH5	YDL154W	TBF1	Q02457	562 aa		2.97	□□□□□ -1.93
MSH5	YDL154W	RAD59	Q12223	238 aa		2.97	□□□□□ -1.93
MSH5	YDL154W	ELP4	Q02884	456 aa	Known RBP	2.97	□□□□□ -1.93
MSH5	YDL154W	GAP1	P19145	602 aa	Predicted RBP	2.96	□□□□□ -1.94
MSH5	YDL154W	SAP30	P38429	201 aa		2.96	□□□□□ -1.94
MSH5	YDL154W	ATG32	P40458	529 aa		2.96	□□□□□ -1.94
MSH5	YDL154W	YPR204W	Q08995	1032 aa		2.96	□□□□□ -1.94
MSH5	YDL154W	BUD4	P47136	1447 aa		2.96	□□□□□ -1.94
MSH5	YDL154W	YJU3	P28321	313 aa		2.95	□□□□□ -1.94
MSH5	YDL154W	NUD1	P32336	851 aa		2.95	□□□□□ -1.94
MSH5	YDL154W	YNL115C	P53925	644 aa		2.95	□□□□□ -1.94
MSH5	YDL154W	LAM6	Q08001	693 aa		2.95	□□□□□ -1.94
MSH5	YDL154W	KEX2	P13134	814 aa		2.94	□□□□□ -1.94
MSH5	YDL154W	GCD11	P32481	527 aa	Known RBP	2.94	□□□□□ -1.94
MSH5	YDL154W	HAP5	Q02516	242 aa		2.94	□□□□□ -1.94
MSH5	YDL154W	SIT4	P20604	311 aa		2.94	□□□□□ -1.94
MSH5	YDL154W	CSE4	P36012	229 aa		2.94	□□□□□ -1.94
MSH5	YDL154W	RTF1	P53064	558 aa		2.94	□□□□□ -1.94
MSH5	YDL154W	YNL108C	P53929	270 aa		2.94	□□□□□ -1.94
MSH5	YDL154W	SSA4	P22202	642 aa	Known RBP	2.93	□□□□□ -1.94
MSH5	YDL154W	TIF1	P10081	395 aa	Known RBP	2.93	□□□□□ -1.94
MSH5	YDL154W	RTG2	P32608	588 aa	Known RBP	2.93	□□□□□ -1.94
MSH5	YDL154W	PDR1	P12383	1068 aa		2.92	□□□□□ -1.94
MSH5	YDL154W	TRM1	P15565	570 aa	Known RBP	2.92	□□□□□ -1.94
MSH5	YDL154W	BIO2	P32451	375 aa		2.92	□□□□□ -1.94
MSH5	YDL154W	PUS6	P53294	404 aa		2.92	□□□□□ -1.94
MSH5	YDL154W	ERG12	P07277	443 aa		2.92	□□□□□ -1.94
MSH5	YDL154W	SPT5	P27692	1063 aa	Known RBP	2.92	□□□□□ -1.94
MSH5	YDL154W	ITT1	Q04638	464 aa		2.92	□□□□□ -1.94
MSH5	YDL154W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	2.91	□□□□□ -1.94	not detected
MSH5	YDL154W	PAT1	P25644	796 aa	Known RBP	2.91	□□□□□ -1.94
MSH5	YDL154W	ARH1	P48360	493 aa		2.91	□□□□□ -1.94
MSH5	YDL154W	SSA1	P10591	642 aa	Known RBP	2.91	□□□□□ -1.94
MSH5	YDL154W	CHL1	P22516	861 aa	Predicted RBP	2.91	□□□□□ -1.94
MSH5	YDL154W	PTC2	P39966	464 aa	Known RBP	2.91	□□□□□ -1.94
MSH5	YDL154W	SGS1	P35187	1447 aa		2.91	□□□□□ -1.94
MSH5	YDL154W	CPS1	P27614	576 aa		2.91	□□□□□ -1.94
MSH5	YDL154W	ISM1	P48526	1002 aa		2.91	□□□□□ -1.94
MSH5	YDL154W	ERF2	Q06551	359 aa		2.91	□□□□□ -1.94
MSH5	YDL154W	SPT23	P35210	1082 aa		2.9	□□□□□ -1.95
MSH5	YDL154W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	2.9	□□□□□ -1.95	not detected
MSH5	YDL154W	RPL34A	P87262	121 aa	Predicted RBP	2.9	□□□□□ -1.95
MSH5	YDL154W	YPP1	P46951	817 aa		2.9	□□□□□ -1.95
MSH5	YDL154W	BNI4	P53858	892 aa		2.9	□□□□□ -1.95
MSH5	YDL154W	YDL206W	Q12424	762 aa		2.9	□□□□□ -1.95
MSH5	YDL154W	MAK16	P10962	306 aa	Predicted RBP	2.89	□□□□□ -1.95
MSH5	YDL154W	SUB2	Q07478	446 aa	Known RBP	2.89	□□□□□ -1.95
MSH5	YDL154W	RAM1	P22007	431 aa		2.89	□□□□□ -1.95
MSH5	YDL154W	KXD1	P53158	218 aa		2.89	□□□□□ -1.95
MSH5	YDL154W	ALR1	Q08269	859 aa		2.89	□□□□□ -1.95
MSH5	YDL154W	YDJ1	P25491	409 aa	Known RBP	2.88	□□□□□ -1.95
MSH5	YDL154W	TTI1	P36097	1038 aa		2.88	□□□□□ -1.95
MSH5	YDL154W	GEF1	P37020	779 aa		2.88	□□□□□ -1.95
MSH5	YDL154W	STR2	P47164	639 aa		2.88	□□□□□ -1.95
MSH5	YDL154W	ENV9	Q08651	330 aa		2.88	□□□□□ -1.95
MSH5	YDL154W	ENO2	P00925	437 aa	Known RBP	2.88	□□□□□ -1.95
MSH5	YDL154W	SPT16	P32558	1035 aa	Known RBP	2.88	□□□□□ -1.95
MSH5	YDL154W	KTR7	P40504	517 aa		2.88	□□□□□ -1.95
MSH5	YDL154W	RRN7	P40992	514 aa		2.88	□□□□□ -1.95
MSH5	YDL154W	TUB4	P53378	473 aa		2.88	□□□□□ -1.95
MSH5	YDL154W	ENO1	P00924	437 aa	Known RBP	2.87	□□□□□ -1.95

Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms