RNA–Protein interactions for RNA: ENSMUST00000002043.9

Ccdc47-201, Transcript of Coiled-coil domain-containing protein 47, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc47, Length 5,193 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc47-201ENSMUST00000002043 Cspp1B2RX88 1205 aa11.52□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Tmf1B9EKI3 1091 aa11.52□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Ddrgk1Q80WW9 315 aa11.52□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Glipr1l2Q9CQ35 332 aa11.52□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 HdgfP51859 237 aaKnown RBP11.52□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Bcl11aQ9QYE3 773 aa11.52□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Cald1E9QA15 768 aaKnown RBP11.51□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Dnttip2Q8R2M2 758 aaKnown RBP11.51□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Irx6Q9ER75 438 aa11.51□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 SetQ9EQU5 289 aaKnown RBP11.5□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Anapc15P60007 132 aa11.5□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Gtf2e1Q9D0D5 440 aa11.49□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Rock2P70336 1388 aa11.49□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Ipo8Q7TMY7 1010 aa11.49□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Ipo9Q91YE6 1041 aa11.49□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Erich6bQ9D4S6 220 aa11.49□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Map4P27546 1125 aaKnown RBP11.49□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Cgnl1Q6AW69 1298 aa11.49□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Iffo2Q8R2V2 512 aa11.48□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Map7d2A2AG50 781 aa11.48□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Nol10Q5RJG1 687 aaKnown RBP11.47□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Supt16hQ920B9 1047 aa11.47□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Stk24Q99KH8 431 aa11.46□□□□□ -0.57
Ccdc47-201ENSMUST00000002043 Pkd2O35245 966 aa11.46□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Fyco1Q8VDC1 1437 aa11.45□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Rassf8Q8CJ96 419 aa11.45□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Speer4f1Q9D5Q6 258 aa11.45□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Kif27Q7M6Z4 1394 aa11.45□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Spag9Q58A65 1321 aaKnown RBP11.45□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Dbr1Q923B1 550 aa11.45□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 1700019A02RikA0A087WPV9 146 aa11.44□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 MecomP14404 1042 aa11.44□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Dhx57Q6P5D3 1388 aaKnown RBP11.44□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Rundc1Q0VDN7 615 aa11.43□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 B4galnt3Q6L8S8 986 aa11.43□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Golga2Q921M4 999 aa11.43□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Becn1O88597 448 aa11.42□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Tpm3P21107 285 aaKnown RBP11.41□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Ccar1Q8CH18 1146 aaKnown RBP11.41□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 CntlnA2AM05 1397 aa11.41□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Pcmtd1P59913 357 aa11.41□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Q3TQI7 289 aaKnown RBP11.41□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 Rtn4Q99P72 1162 aaKnown RBP11.4□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 U2af1Q9D883 239 aaKnown RBP11.4□□□□□ -0.58
Ccdc47-201ENSMUST00000002043 VgfQ0VGU4 617 aa11.39□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Lemd3Q9WU40 921 aa11.39□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Hspa5P20029 655 aaKnown RBP11.39□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Rab11fip3Q8CHD8 1047 aa11.39□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Ccdc47Q9D024 483 aaKnown RBP11.38□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 A0A1L1SQF0 893 aa11.38□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Rsph3aQ3UFY4 516 aa11.37□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 NgefQ8CHT1 710 aa11.37□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Armcx1Q9CX83 456 aa11.37□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Spryd3E9Q9B3 442 aa11.36□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Ush1cQ9ES64 910 aa11.36□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 CgnP59242 1191 aa11.36□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Exoc6Q8R313 802 aa11.36□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Arhgap35Q91YM2 1499 aa11.36□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Ciz1Q8VEH2 845 aa11.36□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Srcin1Q9QWI6 1250 aa11.36□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Fmn1Q05860 1466 aa11.35□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Trim30aP15533 496 aa11.35□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Tpm1P58771 284 aa11.35□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Ipo7Q9EPL8 1038 aaKnown RBP11.35□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Kiaa0754Q69ZZ9 979 aa11.35□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 U2surpQ6NV83 1029 aaKnown RBP11.35□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 St18Q80TY4 1045 aa11.34□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Tmco5bQ80X59 307 aa11.34□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Evc2Q8K1G2 1220 aa11.34□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Cplx2P84086 134 aa11.34□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Aebp1Q640N1 1128 aa11.34□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Cep162Q6ZQ06 1403 aa11.34□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Mphosph9A6H5Y1 991 aa11.34□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Srek1Q8BZX4 494 aaKnown RBP11.34□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Ifit1bl1D3Z6F0 470 aa11.34□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Znf316Q6PGE4 1016 aa11.34□□□□□ -0.59
Ccdc47-201ENSMUST00000002043 Clstn1Q9EPL2 979 aa11.33□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Pds5bQ4VA53 1446 aaKnown RBP11.32□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Baz1bQ9Z277 1479 aa11.32□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Tpm2P58774 284 aa11.31□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Smc4Q8CG47 1286 aa11.31□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Ccer1Q9CQL2 403 aa11.31□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Cnga1P29974 684 aa11.31□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Dcaf11Q91VU6 549 aa11.31□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 CenpjQ569L8 1344 aa11.31□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Gprasp1Q5U4C1 1347 aa11.31□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Hoxa7P02830 229 aa11.3□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 MyclP10166 368 aa11.3□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Ccdc34Q3UI66 367 aa11.3□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Trak1Q6PD31 939 aa11.3□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Mfap1aC0HKD8 439 aaKnown RBP11.3□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Mfap1bC0HKD9 439 aaKnown RBP11.3□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 UacaQ8CGB3 1411 aa11.3□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Mre11Q61216 706 aa11.29□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Ralbp1Q62172 648 aa11.29□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Sf3a1Q8K4Z5 791 aaKnown RBP11.29□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Ylpm1Q9R0I7 1386 aaKnown RBP11.29□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Filip1lQ6P6L0 1131 aa11.29□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Tpm4Q6IRU2 248 aa11.28□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Ftsj3Q9DBE9 838 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 22,080 RNA–protein pairs in 11.1 ms