Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37,89■■■■□ 3,66
Tpm1P58771 Gm25239-201ENSMUST00000174915 86 ntBASIC37,87■■■■□ 3,65
Tpm1P58771 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36,62■■■■□ 3,45
Tpm1P58771 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36,59■■■■□ 3,45
Tpm1P58771 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35,81■■■■□ 3,32
Tpm1P58771 Psd-208ENSMUST00000224556 2034 ntBASIC35,47■■■■□ 3,27
Tpm1P58771 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35,16■■■■□ 3,22
Tpm1P58771 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC34,89■■■■□ 3,18
Tpm1P58771 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34,52■■■■□ 3,12
Tpm1P58771 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34,5■■■■□ 3,11
Tpm1P58771 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC34,24■■■■□ 3,07
Tpm1P58771 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34,17■■■■□ 3,06
Tpm1P58771 Gm15042-201ENSMUST00000120212 883 ntBASIC34,14■■■■□ 3,06
Tpm1P58771 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34,05■■■■□ 3,04
Tpm1P58771 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC33,91■■■■□ 3,02
Tpm1P58771 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC33,82■■■■□ 3
Tpm1P58771 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33,82■■■■□ 3
Tpm1P58771 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33,55■■■□□ 2,96
Tpm1P58771 Gm15045-201ENSMUST00000117359 883 ntBASIC33,49■■■□□ 2,95
Tpm1P58771 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC33,47■■■□□ 2,95
Tpm1P58771 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33,39■■■□□ 2,94
Tpm1P58771 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33,31■■■□□ 2,92
Tpm1P58771 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC33,16■■■□□ 2,9
Tpm1P58771 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC33,12■■■□□ 2,89
Tpm1P58771 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33,07■■■□□ 2,88
Tpm1P58771 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32,86■■■□□ 2,85
Tpm1P58771 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32,81■■■□□ 2,84
Tpm1P58771 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32,79■■■□□ 2,84
Tpm1P58771 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32,77■■■□□ 2,84
Tpm1P58771 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32,77■■■□□ 2,84
Tpm1P58771 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32,77■■■□□ 2,84
Tpm1P58771 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32,76■■■□□ 2,84
Tpm1P58771 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32,65■■■□□ 2,82
Tpm1P58771 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32,61■■■□□ 2,81
Tpm1P58771 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC32,46■■■□□ 2,79
Tpm1P58771 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32,41■■■□□ 2,78
Tpm1P58771 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32,37■■■□□ 2,77
Tpm1P58771 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32,35■■■□□ 2,77
Tpm1P58771 Gm24109-201ENSMUST00000175489 103 ntBASIC32,3■■■□□ 2,76
Tpm1P58771 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC32,24■■■□□ 2,75
Tpm1P58771 Gm10524-201ENSMUST00000181931 1893 ntBASIC32,23■■■□□ 2,75
Tpm1P58771 Gm42596-201ENSMUST00000196305 1958 ntBASIC32,16■■■□□ 2,74
Tpm1P58771 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC32,14■■■□□ 2,74
Tpm1P58771 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32,13■■■□□ 2,73
Tpm1P58771 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32,12■■■□□ 2,73
Tpm1P58771 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32,11■■■□□ 2,73
Tpm1P58771 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC32,11■■■□□ 2,73
Tpm1P58771 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC32,02■■■□□ 2,72
Tpm1P58771 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC31,94■■■□□ 2,7
Tpm1P58771 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC31,88■■■□□ 2,69
Tpm1P58771 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC31,86■■■□□ 2,69
Tpm1P58771 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC31,84■■■□□ 2,69
Tpm1P58771 Gm23366-201ENSMUST00000175022 89 ntBASIC31,83■■■□□ 2,69
Tpm1P58771 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC31,71■■■□□ 2,67
Tpm1P58771 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31,65■■■□□ 2,66
Tpm1P58771 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31,61■■■□□ 2,65
Tpm1P58771 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31,57■■■□□ 2,64
Tpm1P58771 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31,56■■■□□ 2,64
Tpm1P58771 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC31,51■■■□□ 2,64
Tpm1P58771 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31,46■■■□□ 2,63
Tpm1P58771 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC31,45■■■□□ 2,63
Tpm1P58771 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31,42■■■□□ 2,62
Tpm1P58771 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31,39■■■□□ 2,62
Tpm1P58771 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31,37■■■□□ 2,61
Tpm1P58771 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31,31■■■□□ 2,6
Tpm1P58771 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31,3■■■□□ 2,6
Tpm1P58771 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31,3■■■□□ 2,6
Tpm1P58771 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC31,28■■■□□ 2,6
Tpm1P58771 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31,25■■■□□ 2,59
Tpm1P58771 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31,18■■■□□ 2,58
Tpm1P58771 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31,07■■■□□ 2,56
Tpm1P58771 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31,06■■■□□ 2,56
Tpm1P58771 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC31,05■■■□□ 2,56
Tpm1P58771 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2,55
Tpm1P58771 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC30,97■■■□□ 2,55
Tpm1P58771 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30,94■■■□□ 2,54
Tpm1P58771 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30,93■■■□□ 2,54
Tpm1P58771 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC30,91■■■□□ 2,54
Tpm1P58771 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC30,9■■■□□ 2,54
Tpm1P58771 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30,87■■■□□ 2,53
Tpm1P58771 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC30,76■■■□□ 2,51
Tpm1P58771 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC30,73■■■□□ 2,51
Tpm1P58771 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC30,72■■■□□ 2,51
Tpm1P58771 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30,71■■■□□ 2,51
Tpm1P58771 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC30,66■■■□□ 2,5
Tpm1P58771 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC30,61■■■□□ 2,49
Tpm1P58771 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC30,59■■■□□ 2,49
Tpm1P58771 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC30,52■■■□□ 2,48
Tpm1P58771 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC30,5■■■□□ 2,47
Tpm1P58771 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30,48■■■□□ 2,47
Tpm1P58771 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC30,48■■■□□ 2,47
Tpm1P58771 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC30,42■■■□□ 2,46
Tpm1P58771 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC30,39■■■□□ 2,46
Tpm1P58771 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30,38■■■□□ 2,45
Tpm1P58771 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC30,37■■■□□ 2,45
Tpm1P58771 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC30,3■■■□□ 2,44
Tpm1P58771 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC30,25■■■□□ 2,43
Tpm1P58771 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC30,24■■■□□ 2,43
Tpm1P58771 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30,24■■■□□ 2,43
Tpm1P58771 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC30,24■■■□□ 2,43
Retrieved 100 of 76,532 protein–RNA pairs in 11,6 ms