RNA–Protein interactions for RNA: YOR048C

RAT1, Transcript of Nuclear 5' to 3' single-stranded RNA exonuclease, yeast

Gene RAT1, Length 3,021 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RAT1	YOR048C	TOD6	P34219	525 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	YPK3	P38070	525 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	PZF1	P39933	429 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	SLD3	P53135	668 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	SSL1	Q04673	461 aa	Predicted RBP	5.21	□□□□□ -1.58
RAT1	YOR048C	RQC1	Q05468	723 aa	Known RBP	5.21	□□□□□ -1.58
RAT1	YOR048C	RAD34	Q06665	692 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	ESC8	Q08119	714 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	CCP1	P00431	361 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	GOS1	P38736	223 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	SFB3	P38810	929 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	YHB1	P39676	399 aa	Known RBP	5.21	□□□□□ -1.58
RAT1	YOR048C	YEL023C	P39992	682 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	YJL055W	P47044	245 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	HMS2	P47175	358 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	PET117	Q02771	107 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	ARR1	Q06596	294 aa		5.21	□□□□□ -1.58
RAT1	YOR048C	PHO5	P00635	467 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	NFT1	P0CE68	1218 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	MNN1	P39106	762 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	PMT4	P46971	762 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	YJR124C	P47159	448 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	MAL11	P53048	616 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	SYF2	P53277	215 aa	Predicted RBP	5.2	□□□□□ -1.58
RAT1	YOR048C	CAF120	P53836	1060 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	PML39	Q03760	334 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	YDL114W	Q07530	308 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	HRK1	Q08732	759 aa	Known RBP	5.2	□□□□□ -1.58
RAT1	YOR048C	YGK3	Q12222	375 aa	Predicted RBP	5.2	□□□□□ -1.58
RAT1	YOR048C	HER1	Q12276	1246 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	GRR1	P24814	1151 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	ALY1	P36117	915 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	GND1	P38720	489 aa	Known RBP	5.2	□□□□□ -1.58
RAT1	YOR048C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.2	□□□□□ -1.58	not detected
RAT1	YOR048C	THO1	P40040	218 aa	Known RBP	5.2	□□□□□ -1.58
RAT1	YOR048C	RGI2	P40188	164 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	YIL089W	P40500	205 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	PAM16	P42949	149 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	MUS81	Q04149	632 aa	Predicted RBP	5.2	□□□□□ -1.58
RAT1	YOR048C	RCN2	Q12044	265 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	NFI1	Q12216	726 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	RBD2	Q12270	262 aa		5.2	□□□□□ -1.58
RAT1	YOR048C	WTM1	Q12363	437 aa	Known RBP	5.2	□□□□□ -1.58
RAT1	YOR048C	ATP1	P07251	545 aa	Known RBP	5.19	□□□□□ -1.58
RAT1	YOR048C	LEU1	P07264	779 aa	Known RBP	5.19	□□□□□ -1.58
RAT1	YOR048C	DMC1	P25453	334 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	WHI3	P34761	661 aa	Known RBP	5.19	□□□□□ -1.58
RAT1	YOR048C	IRS4	P36115	615 aa	Known RBP	5.19	□□□□□ -1.58
RAT1	YOR048C	HSE1	P38753	452 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	DSS1	P39112	969 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	YAR028W	P39548	234 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	EXO1	P39875	702 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	AFG3	P39925	761 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	HAT2	P39984	401 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	AIM23	P47015	356 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	RPS12	P48589	143 aa	Known RBP	5.19	□□□□□ -1.58
RAT1	YOR048C	VPS73	P53142	486 aa	Known RBP	5.19	□□□□□ -1.58
RAT1	YOR048C	HST3	P53687	447 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	NUP49	Q02199	472 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	SPP1	Q03012	353 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	YDR132C	Q03900	495 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	NGL1	Q08213	363 aa	Known RBP	5.19	□□□□□ -1.58
RAT1	YOR048C	MED2	Q12124	431 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	GPM1	P00950	247 aa	Known RBP	5.19	□□□□□ -1.58
RAT1	YOR048C	REP1	P03871	373 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	GAL80	P04387	435 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	PET122	P10355	254 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	PHO84	P25297	587 aa	Known RBP	5.19	□□□□□ -1.58
RAT1	YOR048C	RER1	P25560	188 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	VMA6	P32366	345 aa	Known RBP	5.19	□□□□□ -1.58
RAT1	YOR048C	SHE3	P38272	425 aa	Known RBP	5.19	□□□□□ -1.58
RAT1	YOR048C	COS111	P38308	924 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	YHK8	P38776	514 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	ATG7	P38862	630 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	GYP8	P43570	497 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	AAT1	Q01802	451 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	HER2	Q03557	464 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	PEX10	Q05568	337 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	NDD1	Q08887	554 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	TY3A-G	Q12173	290 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	PST1	Q12355	444 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	TY3A-I	Q99219	290 aa		5.19	□□□□□ -1.58
RAT1	YOR048C	ADE5,7	P07244	802 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	SEC17	P32602	292 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	LRG1	P35688	1017 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	VPS21	P36017	210 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	GLG1	P36143	616 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	GPX2	P38143	162 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	ECM13	P38195	257 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	JLP2	P40206	208 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	GTO1	P48239	356 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	PSP1	P50896	841 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	ROM1	P53046	1155 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	EMC4	P53073	190 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	PRM8	P53174	237 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	DAM1	P53267	343 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	DSL1	P53847	754 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	ABZ2	Q03266	374 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	TFB3	Q03290	321 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	ERB1	Q04660	807 aa	Known RBP	5.18	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms