RNA–Protein interactions for RNA: YDR392W

SPT3, Transcript of Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, yeast

Gene SPT3, Length 1,014 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT3	YDR392W	SPO24	Q3E752	67 aa		4.58	□□□□□ -1.68
SPT3	YDR392W	LAG2	Q92325	660 aa		4.58	□□□□□ -1.68
SPT3	YDR392W	FOB1	O13329	566 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	SIR3	P06701	978 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	YEL076C-A	P0CX16	216 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	YLR464W	P0CX17	216 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	MRPL8	P22353	238 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	BMH2	P34730	273 aa	Known RBP	4.57	□□□□□ -1.68
SPT3	YDR392W	GLG1	P36143	616 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	UBA4	P38820	440 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	BEM4	P39011	633 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	YEL076C	P39971	216 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	GAT2	P40209	560 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	VMA13	P41807	478 aa	Known RBP	4.57	□□□□□ -1.68
SPT3	YDR392W	SDA1	P53313	767 aa	Known RBP	4.57	□□□□□ -1.68
SPT3	YDR392W	TEX1	P53851	422 aa	Known RBP	4.57	□□□□□ -1.68
SPT3	YDR392W	YNL143C	P53908	130 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	DIS3	Q08162	1001 aa	Known RBP	4.57	□□□□□ -1.68
SPT3	YDR392W	YAP7	Q08182	245 aa		4.57	□□□□□ -1.68
SPT3	YDR392W	MDM35	O60200	86 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	PMA2	P19657	947 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	SWI3	P32591	825 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	YKL023W	P36103	277 aa	Known RBP	4.56	□□□□□ -1.68
SPT3	YDR392W	SRP68	P38687	599 aa	Known RBP	4.56	□□□□□ -1.68
SPT3	YDR392W	YER188W	P40103	239 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	ARG2	P40360	574 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	PAN6	P40459	309 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	SHR5	P41912	237 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	CCT7	P42943	550 aa	Known RBP	4.56	□□□□□ -1.68
SPT3	YDR392W	TY4A-J	P47023	414 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	ZIP2	P53061	704 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	DUO1	P53168	247 aa	Known RBP	4.56	□□□□□ -1.68
SPT3	YDR392W	GRX8	Q05926	109 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	YKL033W-A	Q86ZR7	236 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	YBR182C-A	Q8TGU6	64 aa		4.56	□□□□□ -1.68
SPT3	YDR392W	TUF1	P02992	437 aa	Known RBP	4.55	□□□□□ -1.68
SPT3	YDR392W	RPB9	P27999	122 aa		4.55	□□□□□ -1.68
SPT3	YDR392W	MSR1	P38714	643 aa		4.55	□□□□□ -1.68
SPT3	YDR392W	XBP1	P40489	647 aa		4.55	□□□□□ -1.68
SPT3	YDR392W	RLP7	P40693	322 aa	Known RBP	4.55	□□□□□ -1.68
SPT3	YDR392W	SAP185	P40856	1058 aa		4.55	□□□□□ -1.68
SPT3	YDR392W	ATG4	P53867	494 aa		4.55	□□□□□ -1.68
SPT3	YDR392W	ASI1	P54074	624 aa		4.55	□□□□□ -1.68
SPT3	YDR392W	PRO2	P54885	456 aa	Known RBP	4.55	□□□□□ -1.68
SPT3	YDR392W	PIN3	Q06449	215 aa		4.55	□□□□□ -1.68
SPT3	YDR392W	BUD7	Q08754	746 aa		4.55	□□□□□ -1.68
SPT3	YDR392W	RIM20	Q12033	661 aa		4.55	□□□□□ -1.68
SPT3	YDR392W	MDM32	Q12171	622 aa		4.55	□□□□□ -1.68
SPT3	YDR392W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.55	□□□□□ -1.68	not detected
SPT3	YDR392W	DIF1	O13577	133 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	KAR1	P11927	433 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	CKA2	P19454	339 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	CBP3	P21560	335 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	EMP70	P32802	667 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	IML3	P38265	245 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	ICS2	P38284	255 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	YGP1	P38616	354 aa	Known RBP	4.54	□□□□□ -1.68
SPT3	YDR392W	NPR3	P38742	1146 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	YMR144W	P40214	342 aa	Known RBP	4.54	□□□□□ -1.68
SPT3	YDR392W	PRE6	P40303	254 aa	Known RBP	4.54	□□□□□ -1.68
SPT3	YDR392W	YIL092W	P40497	633 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	YGR153W	P48238	217 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	GLO1	P50107	326 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	MRS2	Q01926	470 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	ATP25	Q03153	612 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	CTK1	Q03957	528 aa	Known RBP	4.54	□□□□□ -1.68
SPT3	YDR392W	EMI1	Q04406	187 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	TAF9	Q05027	157 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	YLR352W	Q06479	807 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	TIP41	Q12199	356 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	YOR338W	Q99326	363 aa		4.54	□□□□□ -1.68
SPT3	YDR392W	TEF1	P02994	458 aa	Known RBP	4.53	□□□□□ -1.68
SPT3	YDR392W	VAS1	P07806	1104 aa	Known RBP	4.53	□□□□□ -1.68
SPT3	YDR392W	COX11	P19516	300 aa	Known RBP	4.53	□□□□□ -1.68
SPT3	YDR392W	GAL11	P19659	1081 aa		4.53	□□□□□ -1.68
SPT3	YDR392W	PRP2	P20095	876 aa	Predicted RBP	4.53	□□□□□ -1.68
SPT3	YDR392W	RFA2	P26754	273 aa	Known RBP	4.53	□□□□□ -1.68
SPT3	YDR392W	PMT2	P31382	759 aa		4.53	□□□□□ -1.68
SPT3	YDR392W	YHR182W	P38870	785 aa		4.53	□□□□□ -1.68
SPT3	YDR392W	BDH2	P39713	417 aa		4.53	□□□□□ -1.68
SPT3	YDR392W	PAN2	P53010	1115 aa	Predicted RBP	4.53	□□□□□ -1.68
SPT3	YDR392W	IBD2	P53892	351 aa		4.53	□□□□□ -1.68
SPT3	YDR392W	CEF1	Q03654	590 aa	Predicted RBP	4.53	□□□□□ -1.68
SPT3	YDR392W	GAS3	Q03655	524 aa		4.53	□□□□□ -1.68
SPT3	YDR392W	DON1	Q05610	365 aa		4.53	□□□□□ -1.68
SPT3	YDR392W	YOR376W	Q08900	122 aa		4.53	□□□□□ -1.68
SPT3	YDR392W	VPS54	Q12071	889 aa		4.53	□□□□□ -1.68
SPT3	YDR392W	PFK27	Q12471	397 aa	Predicted RBP	4.53	□□□□□ -1.68
SPT3	YDR392W	PNO1	Q99216	274 aa	Known RBP	4.53	□□□□□ -1.68
SPT3	YDR392W	AI5_BETA	Q9ZZX0	354 aa		4.53	□□□□□ -1.68
SPT3	YDR392W	AEP2	P22136	580 aa		4.52	□□□□□ -1.69
SPT3	YDR392W	YJU2	P28320	278 aa	Predicted RBP	4.52	□□□□□ -1.69
SPT3	YDR392W	KAR9	P32526	644 aa		4.52	□□□□□ -1.69
SPT3	YDR392W	FMP46	P36141	133 aa	Known RBP	4.52	□□□□□ -1.69
SPT3	YDR392W	KAP104	P38217	918 aa	Known RBP	4.52	□□□□□ -1.69
SPT3	YDR392W	OM14	P38325	134 aa		4.52	□□□□□ -1.69
SPT3	YDR392W	PRP31	P49704	494 aa	Predicted RBP	4.52	□□□□□ -1.69
SPT3	YDR392W	YPS7	Q06325	596 aa		4.52	□□□□□ -1.69
SPT3	YDR392W	TRE2	Q08693	809 aa		4.52	□□□□□ -1.69
SPT3	YDR392W	CPA2	P03965	1118 aa	Known RBP	4.51	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 28.9 ms