RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP42	YDR235W	HRI1	Q05905	244 aa	Known RBP	0.82	□□□□□ -2.28
PRP42	YDR235W	TFC6	Q06339	672 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	NUS1	Q12063	375 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	YBL111C	Q3E7Y5	667 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	MTF2	P10849	440 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	EXO70	P19658	623 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	PWP1	P21304	576 aa	Known RBP	0.82	□□□□□ -2.28
PRP42	YDR235W	SYN8	P31377	255 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	PDB1	P32473	366 aa	Known RBP	0.82	□□□□□ -2.28
PRP42	YDR235W	XRS2	P33301	854 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	YNG2	P38806	282 aa	Known RBP	0.82	□□□□□ -2.28
PRP42	YDR235W	FAU1	P40099	211 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	RIC1	P40395	1056 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	PAN6	P40459	309 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	DSD1	P53095	428 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	MSC1	Q03104	513 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	RSN1	Q03516	953 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	SKG3	Q06315	1026 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	ETT1	Q08421	412 aa	Known RBP	0.82	□□□□□ -2.28
PRP42	YDR235W	NCE102	Q12207	173 aa	RIP-Chip data	0.82	□□□□□ -2.28	not detected
PRP42	YDR235W	YPS3	Q12303	508 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	SUC2	P00724	532 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	RAD52	P06778	471 aa	Known RBP	0.81	□□□□□ -2.28
PRP42	YDR235W	UTR4	P32626	227 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	PTH2	P34222	208 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	ALY1	P36117	915 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	NAT2	P37293	288 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	SAP185	P40856	1058 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	GCD10	P41814	478 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	RRT5	P43607	289 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	AVT4	P50944	713 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	RRT6	P53117	311 aa	Predicted RBP	0.81	□□□□□ -2.28
PRP42	YDR235W	PIL1	P53252	339 aa	Known RBP	0.81	□□□□□ -2.28
PRP42	YDR235W	BSC5	P53755	489 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	DPB4	Q04603	196 aa	Known RBP	0.81	□□□□□ -2.28
PRP42	YDR235W	PHO92	Q06390	306 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	PSR1	Q07800	427 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	YOR365C	Q08844	703 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	TRM8	Q12009	286 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	SSM4	P40318	1319 aa		0.81	□□□□□ -2.28
PRP42	YDR235W	SNF1	P06782	633 aa	Known RBP	0.8	□□□□□ -2.28
PRP42	YDR235W	DAL2	P25335	343 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	ADH7	P25377	361 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	MRS6	P32864	603 aa	Known RBP	0.8	□□□□□ -2.28
PRP42	YDR235W	SLC1	P33333	303 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	YBL055C	P34220	418 aa	Predicted RBP	0.8	□□□□□ -2.28
PRP42	YDR235W	NUP133	P36161	1157 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	PSY4	P38193	441 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	YHR210C	P38893	341 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	SLZ1	P40167	298 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	WWM1	P43582	211 aa	Known RBP	0.8	□□□□□ -2.28
PRP42	YDR235W	YJR008W	P47085	338 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	BNA1	P47096	177 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	ART5	P53244	586 aa	Known RBP	0.8	□□□□□ -2.28
PRP42	YDR235W	MUB1	Q03162	620 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	RPC11	Q04307	110 aa	Predicted RBP	0.8	□□□□□ -2.28
PRP42	YDR235W	VID22	Q05934	901 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	IES4	Q08561	116 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	FDH1	Q08911	376 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	YLR108C	Q12259	485 aa		0.8	□□□□□ -2.28
PRP42	YDR235W	RPB2	P08518	1224 aa	Known RBP	0.79	□□□□□ -2.28
PRP42	YDR235W	VMA16	P23968	213 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	MRP20	P32387	263 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	MSG5	P38590	489 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	YER010C	P40011	234 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	KAP123	P40069	1113 aa	Known RBP	0.79	□□□□□ -2.28
PRP42	YDR235W	YGR126W	P53274	230 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	GPI1	P53306	609 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	GOR1	P53839	350 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	IBD2	P53892	351 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	GTR1	Q00582	310 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	PEX25	Q02969	394 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	ATG16	Q03818	150 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	RCO1	Q04779	684 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	SNO4	Q04902	237 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	YDL057W	Q07379	328 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	HSP33	Q08914	237 aa	Known RBP	0.79	□□□□□ -2.28
PRP42	YDR235W	HSP32	Q08992	237 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	NBP2	Q12163	236 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	RFM1	Q12192	310 aa		0.79	□□□□□ -2.28
PRP42	YDR235W	PRB1	P09232	635 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	KGD1	P20967	1014 aa	Known RBP	0.78	□□□□□ -2.28
PRP42	YDR235W	PRE8	P23639	250 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	BOS1	P25385	244 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	PUP3	P25451	205 aa	Known RBP	0.78	□□□□□ -2.28
PRP42	YDR235W	NDI1	P32340	513 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	RPL32	P38061	130 aa	Known RBP	0.78	□□□□□ -2.28
PRP42	YDR235W	ICS2	P38284	255 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	AXL2	P38928	823 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	TPM2	P40414	161 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	PRM5	P40476	318 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	PTR3	P43606	678 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	AAD10	P47182	288 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	YGR021W	P53212	290 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	CBK1	P53894	756 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	EFM6	P53970	246 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	TCO89	Q08921	799 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	CFT2	Q12102	859 aa	Predicted RBP	0.78	□□□□□ -2.28
PRP42	YDR235W	YOL087C	Q99247	1116 aa		0.78	□□□□□ -2.28
PRP42	YDR235W	PEP4	P07267	405 aa	Known RBP	0.78	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 25.1 ms