RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	AVT6	P40074	448 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	MKT1	P40850	830 aa	Known RBP	4.84	□□□□□ -1.63
NUP116	YMR047C	RET2	P43621	546 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	ERP6	P53198	216 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	MNT4	P53745	580 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	GIM3	P53900	129 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	CIK1	Q01649	594 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	ARA2	Q04212	335 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	YDR514C	Q04408	483 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	VPS38	Q05919	439 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	SGT1	Q08446	395 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	RPN8	Q08723	338 aa	Known RBP	4.84	□□□□□ -1.63
NUP116	YMR047C	TGL5	Q12043	749 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	YDR061W	Q12298	539 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	PEX11	Q12462	236 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	RRP43	P25359	394 aa	Predicted RBP	4.84	□□□□□ -1.63
NUP116	YMR047C	YCR016W	P25617	290 aa	Known RBP	4.84	□□□□□ -1.63
NUP116	YMR047C	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.84	□□□□□ -1.63	not detected
NUP116	YMR047C	SMF2	P38778	549 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	GVP36	P40531	326 aa	Known RBP	4.84	□□□□□ -1.63
NUP116	YMR047C	YJR124C	P47159	448 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	YGL117W	P53133	265 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	YNL040W	P53960	456 aa	Predicted RBP	4.84	□□□□□ -1.63
NUP116	YMR047C	ADI1	Q03677	179 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	CRN1	Q06440	651 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	AAD15	Q08361	143 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	RSB1	Q08417	382 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	YRR1	Q12172	810 aa		4.84	□□□□□ -1.63
NUP116	YMR047C	SUC2	P00724	532 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	CBP6	P07253	162 aa	Predicted RBP	4.84	□□□□□ -1.64
NUP116	YMR047C	SCL1	P21243	252 aa	Known RBP	4.84	□□□□□ -1.64
NUP116	YMR047C	YJU2	P28320	278 aa	Predicted RBP	4.84	□□□□□ -1.64
NUP116	YMR047C	PRP19	P32523	503 aa	Known RBP	4.84	□□□□□ -1.64
NUP116	YMR047C	RCY1	P39531	840 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	YEL028W	P39989	153 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	EFM4	P40516	257 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	MTG1	Q03151	367 aa	Predicted RBP	4.84	□□□□□ -1.64
NUP116	YMR047C	ATP25	Q03153	612 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	YPR114W	Q06107	315 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	OPI10	Q08202	246 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	YLR125W	Q12138	136 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	ATG9	Q12142	997 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	HOS1	Q12214	470 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	EMP46	Q12396	444 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	CMC2	Q3E7A4	109 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	YOS9	Q99220	542 aa		4.84	□□□□□ -1.64
NUP116	YMR047C	SPO12	P17123	173 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	REC107	P21651	314 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	SEC65	P29478	273 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	CBF2	P32504	956 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	YBL055C	P34220	418 aa	Predicted RBP	4.83	□□□□□ -1.64
NUP116	YMR047C	TCD2	P36101	447 aa	Known RBP	4.83	□□□□□ -1.64
NUP116	YMR047C	CCZ1	P38273	704 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	SET5	P38890	526 aa	Known RBP	4.83	□□□□□ -1.64
NUP116	YMR047C	MRX1	P40050	688 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	JEM1	P40358	645 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	RRT5	P43607	289 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	ARI1	P53111	347 aa	Known RBP	4.83	□□□□□ -1.64
NUP116	YMR047C	YNL143C	P53908	130 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	UME1	Q03010	460 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	NRT1	Q08485	598 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	YLL056C	Q12177	298 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	APA1	P16550	321 aa	Known RBP	4.83	□□□□□ -1.64
NUP116	YMR047C	DBF20	P32328	564 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	UBS1	P38290	277 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	SAE2	P46946	345 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	BNA3	P47039	444 aa	Known RBP	4.83	□□□□□ -1.64
NUP116	YMR047C	PET130	P47065	347 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	SPC105	P53148	917 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	ZRG17	P53735	605 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	ARX1	Q03862	593 aa	Known RBP	4.83	□□□□□ -1.64
NUP116	YMR047C	BLS1	Q06071	122 aa		4.83	□□□□□ -1.64
NUP116	YMR047C	SEC63	P14906	663 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	MSS116	P15424	664 aa	Known RBP	4.82	□□□□□ -1.64
NUP116	YMR047C	MET8	P15807	274 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	POL30	P15873	258 aa	Known RBP	4.82	□□□□□ -1.64
NUP116	YMR047C	PMI40	P29952	429 aa	Known RBP	4.82	□□□□□ -1.64
NUP116	YMR047C	NCL1	P38205	684 aa	Known RBP	4.82	□□□□□ -1.64
NUP116	YMR047C	BIT2	P38346	545 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	RIM11	P38615	370 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	STL1	P39932	569 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	UBP7	P40453	1071 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	TED1	P40533	473 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	SNL1	P40548	159 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	RPS10B	P46784	105 aa	Known RBP	4.82	□□□□□ -1.64
NUP116	YMR047C	RMI1	Q02685	241 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	TRM82	Q03774	444 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	OPT2	Q06593	877 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	LDB18	Q07887	179 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	RPS10A	Q08745	105 aa	Predicted RBP	4.82	□□□□□ -1.64
NUP116	YMR047C	FMP40	Q08968	688 aa	Predicted RBP	4.82	□□□□□ -1.64
NUP116	YMR047C	TMA46	Q12000	345 aa	Known RBP	4.82	□□□□□ -1.64
NUP116	YMR047C	RIB2	Q12362	591 aa	Known RBP	4.82	□□□□□ -1.64
NUP116	YMR047C	ADF1	Q2V2Q1	113 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	RAD1	P06777	1100 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	SCH9	P11792	824 aa	Known RBP	4.82	□□□□□ -1.64
NUP116	YMR047C	SST2	P11972	698 aa	Known RBP	4.82	□□□□□ -1.64
NUP116	YMR047C	RPO26	P20435	155 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	SNT1	P25357	1226 aa		4.82	□□□□□ -1.64
NUP116	YMR047C	ZIP1	P31111	875 aa		4.82	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 16.7 ms