RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	INP53	Q12271	1107 aa		4.42	□□□□□ -1.7
VMA22	YHR060W	TAF3	Q12297	353 aa		4.42	□□□□□ -1.7
VMA22	YHR060W	YDR061W	Q12298	539 aa		4.42	□□□□□ -1.7
VMA22	YHR060W	NBL1	Q3E7Y6	73 aa		4.42	□□□□□ -1.7
VMA22	YHR060W	AI5_ALPHA	Q9ZZX1	630 aa		4.42	□□□□□ -1.7
VMA22	YHR060W	TPK2	P06245	380 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	HIP1	P06775	603 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	ART10	P18634	518 aa	Known RBP	4.41	□□□□□ -1.7
VMA22	YHR060W	PIM1	P36775	1133 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	SLM4	P38247	162 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	ICS2	P38284	255 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	YIL089W	P40500	205 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	PTR3	P43606	678 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	STB2	P46679	850 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	NPA3	P47122	385 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	YGR149W	P48236	432 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	COG2	P53271	262 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	CWC22	P53333	577 aa	Known RBP	4.41	□□□□□ -1.7
VMA22	YHR060W	RPS15	Q01855	142 aa	Known RBP	4.41	□□□□□ -1.7
VMA22	YHR060W	RNT1	Q02555	471 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	PPM1	Q04081	328 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	PDS5	Q04264	1277 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	SPH1	Q06160	661 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	DBP9	Q06218	594 aa	Known RBP	4.41	□□□□□ -1.7
VMA22	YHR060W	CDC45	Q08032	650 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	FRE3	Q08905	711 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	AEP3	Q12089	606 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	PNS1	Q12412	539 aa		4.41	□□□□□ -1.7
VMA22	YHR060W	TFB5	Q3E7C1	72 aa	Predicted RBP	4.41	□□□□□ -1.7
VMA22	YHR060W	BOS1	P25385	244 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	IMG1	P25626	169 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	IDH2	P28241	369 aa	Known RBP	4.4	□□□□□ -1.71
VMA22	YHR060W	HXT3	P32466	567 aa	Known RBP	4.4	□□□□□ -1.71
VMA22	YHR060W	NIP1	P32497	812 aa	Known RBP	4.4	□□□□□ -1.71
VMA22	YHR060W	RML2	P32611	393 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	UGP1	P32861	499 aa	Known RBP	4.4	□□□□□ -1.71
VMA22	YHR060W	TUL1	P36096	758 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	VPS45	P38932	577 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	VMA13	P41807	478 aa	Known RBP	4.4	□□□□□ -1.71
VMA22	YHR060W	SUN4	P53616	420 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	ATG4	P53867	494 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	YNL058C	P53947	316 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	UBP16	Q02863	499 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	RGC1	Q06108	1083 aa	Known RBP	4.4	□□□□□ -1.71
VMA22	YHR060W	HBT1	Q07653	1046 aa	Known RBP	4.4	□□□□□ -1.71
VMA22	YHR060W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.4	□□□□□ -1.71	not detected
VMA22	YHR060W	MLH3	Q12083	715 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	USV1	Q12132	391 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	MDY2	Q12285	212 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	PSY3	Q12318	242 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	YDL007C-A	Q2V2Q0	85 aa		4.4	□□□□□ -1.71
VMA22	YHR060W	SGS1	P35187	1447 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	ILV2	P07342	687 aa	Known RBP	4.39	□□□□□ -1.71
VMA22	YHR060W	GRR1	P24814	1151 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	YSP3	P25036	478 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	PUP3	P25451	205 aa	Known RBP	4.39	□□□□□ -1.71
VMA22	YHR060W	TIF3	P34167	436 aa	Known RBP	4.39	□□□□□ -1.71
VMA22	YHR060W	SNU114	P36048	1008 aa	Known RBP	4.39	□□□□□ -1.71
VMA22	YHR060W	VBA2	P38358	474 aa	Known RBP	4.39	□□□□□ -1.71
VMA22	YHR060W	SUL1	P38359	859 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	MSR1	P38714	643 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	MUP3	P38734	546 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	ECM10	P39987	644 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	YTA12	P40341	825 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	CHS6	P40955	746 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	EPL1	P43572	832 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	COS5	P47187	383 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	BUL1	P48524	976 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	APT1	P49435	187 aa	Known RBP	4.39	□□□□□ -1.71
VMA22	YHR060W	VPS73	P53142	486 aa	Known RBP	4.39	□□□□□ -1.71
VMA22	YHR060W	PDR16	P53860	351 aa	Known RBP	4.39	□□□□□ -1.71
VMA22	YHR060W	ADE16	P54113	591 aa	Known RBP	4.39	□□□□□ -1.71
VMA22	YHR060W	RBS1	Q05672	457 aa	Known RBP	4.39	□□□□□ -1.71
VMA22	YHR060W	COS7	Q07788	383 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	SLK19	Q08581	821 aa	Known RBP	4.39	□□□□□ -1.71
VMA22	YHR060W	YIL002W-A	Q3E7Z5	69 aa		4.39	□□□□□ -1.71
VMA22	YHR060W	SPS4	P09937	338 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	WHI2	P12611	486 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	SPO7	P18410	259 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	SRP54	P20424	541 aa	Known RBP	4.38	□□□□□ -1.71
VMA22	YHR060W	RIB7	P33312	244 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	SRB2	P34162	210 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	MMS4	P38257	691 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	KSP1	P38691	1029 aa	Known RBP	4.38	□□□□□ -1.71
VMA22	YHR060W	CIN4	P39110	191 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	ARG2	P40360	574 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	FET5	P43561	622 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	STU2	P46675	888 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	SHE4	P51534	789 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	ALT2	P52892	507 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	CUE3	P53137	624 aa	Known RBP	4.38	□□□□□ -1.71
VMA22	YHR060W	NMA2	P53204	395 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	RPT4	P53549	437 aa	Known RBP	4.38	□□□□□ -1.71
VMA22	YHR060W	YNR068C	P53754	272 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	ERV25	P54837	211 aa	Known RBP	4.38	□□□□□ -1.71
VMA22	YHR060W	KIN4	Q01919	800 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	RPN9	Q04062	393 aa	Known RBP	4.38	□□□□□ -1.71
VMA22	YHR060W	YMR130W	Q04223	302 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	YLH47	Q06493	454 aa		4.38	□□□□□ -1.71
VMA22	YHR060W	YOL073C	Q08232	322 aa		4.38	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 18.2 ms