RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W UBP8P50102 471 aa3.39□□□□□ -1.87
UPF3YGR072W YPR003CP53394 754 aa3.39□□□□□ -1.87
UPF3YGR072W BOP3P53958 396 aa3.39□□□□□ -1.87
UPF3YGR072W EFM6P53970 246 aa3.39□□□□□ -1.87
UPF3YGR072W YDR239CQ03780 787 aa3.39□□□□□ -1.87
UPF3YGR072W SNU56Q03782 492 aaKnown RBP3.39□□□□□ -1.87
UPF3YGR072W YMR155WQ03795 547 aa3.39□□□□□ -1.87
UPF3YGR072W DPB4Q04603 196 aaKnown RBP3.39□□□□□ -1.87
UPF3YGR072W PDR8Q06149 701 aa3.39□□□□□ -1.87
UPF3YGR072W YPL272CQ08984 517 aa3.39□□□□□ -1.87
UPF3YGR072W GET3Q12154 354 aaKnown RBP3.39□□□□□ -1.87
UPF3YGR072W GAL80P04387 435 aa3.38□□□□□ -1.87
UPF3YGR072W KRS1P15180 591 aaKnown RBP3.38□□□□□ -1.87
UPF3YGR072W PDA1P16387 420 aaKnown RBP3.38□□□□□ -1.87
UPF3YGR072W MAK32P23060 363 aa3.38□□□□□ -1.87
UPF3YGR072W BOS1P25385 244 aa3.38□□□□□ -1.87
UPF3YGR072W CDC60P26637 1090 aaKnown RBP3.38□□□□□ -1.87
UPF3YGR072W BLI1P35727 113 aa3.38□□□□□ -1.87
UPF3YGR072W OCT1P35999 772 aa3.38□□□□□ -1.87
UPF3YGR072W CST26P38226 397 aa3.38□□□□□ -1.87
UPF3YGR072W IMD2P38697 523 aaKnown RBP3.38□□□□□ -1.87
UPF3YGR072W ELO1P39540 310 aa3.38□□□□□ -1.87
UPF3YGR072W YIL152WP40455 235 aa3.38□□□□□ -1.87
UPF3YGR072W CIN1P40987 1014 aa3.38□□□□□ -1.87
UPF3YGR072W IMD3P50095 523 aaKnown RBP3.38□□□□□ -1.87
UPF3YGR072W FIN1Q03898 291 aa3.38□□□□□ -1.87
UPF3YGR072W YLR455WQ06188 304 aa3.38□□□□□ -1.87
UPF3YGR072W CDC45Q08032 650 aa3.38□□□□□ -1.87
UPF3YGR072W MCH4Q08268 501 aa3.38□□□□□ -1.87
UPF3YGR072W ATG29Q12092 213 aa3.38□□□□□ -1.87
UPF3YGR072W ATG9Q12142 997 aa3.38□□□□□ -1.87
UPF3YGR072W GRX6Q12438 231 aa3.38□□□□□ -1.87
UPF3YGR072W SMC6Q12749 1114 aa3.38□□□□□ -1.87
UPF3YGR072W GAL4P04386 881 aa3.37□□□□□ -1.87
UPF3YGR072W ARG81P05085 880 aa3.37□□□□□ -1.87
UPF3YGR072W TKL1P23254 680 aaKnown RBP3.37□□□□□ -1.87
UPF3YGR072W PUP3P25451 205 aaKnown RBP3.37□□□□□ -1.87
UPF3YGR072W IMG1P25626 169 aa3.37□□□□□ -1.87
UPF3YGR072W VMA8P32610 256 aaKnown RBP3.37□□□□□ -1.87
UPF3YGR072W CMC1P36064 111 aa3.37□□□□□ -1.87
UPF3YGR072W TCD2P36101 447 aaKnown RBP3.37□□□□□ -1.87
UPF3YGR072W MNN2P38069 597 aa3.37□□□□□ -1.87
UPF3YGR072W SRP72P38688 640 aaKnown RBP3.37□□□□□ -1.87
UPF3YGR072W DBP8P38719 431 aa3.37□□□□□ -1.87
UPF3YGR072W ARN1P38731 627 aa3.37□□□□□ -1.87
UPF3YGR072W SMF1P38925 575 aa3.37□□□□□ -1.87
UPF3YGR072W CCT6P39079 546 aa3.37□□□□□ -1.87
UPF3YGR072W YEL057CP39983 233 aa3.37□□□□□ -1.87
UPF3YGR072W SSU1P41930 458 aa3.37□□□□□ -1.87
UPF3YGR072W YML6P51998 286 aa3.37□□□□□ -1.87
UPF3YGR072W ERG26P53199 349 aaKnown RBP3.37□□□□□ -1.87
UPF3YGR072W TWF1P53250 332 aa3.37□□□□□ -1.87
UPF3YGR072W JJJ1P53863 590 aa3.37□□□□□ -1.87
UPF3YGR072W IPI3P53877 555 aa3.37□□□□□ -1.87
UPF3YGR072W EMI2Q04409 500 aaKnown RBP3.37□□□□□ -1.87
UPF3YGR072W SWF1Q04629 336 aa3.37□□□□□ -1.87
UPF3YGR072W GRC3Q07845 632 aa3.37□□□□□ -1.87
UPF3YGR072W ATX2Q12067 313 aa3.37□□□□□ -1.87
UPF3YGR072W UBX3Q12229 455 aa3.37□□□□□ -1.87
UPF3YGR072W ISA2Q12425 185 aa3.37□□□□□ -1.87
UPF3YGR072W PHO2P07269 559 aa3.36□□□□□ -1.87
UPF3YGR072W CLC1P17891 233 aa3.36□□□□□ -1.87
UPF3YGR072W ART10P18634 518 aaKnown RBP3.36□□□□□ -1.87
UPF3YGR072W YCR043CP25361 127 aa3.36□□□□□ -1.87
UPF3YGR072W GPI10P30777 616 aa3.36□□□□□ -1.87
UPF3YGR072W RKM3P38222 552 aa3.36□□□□□ -1.87
UPF3YGR072W ERV46P39727 415 aa3.36□□□□□ -1.87
UPF3YGR072W LSM5P40089 93 aaKnown RBP3.36□□□□□ -1.87
UPF3YGR072W CDC1P40986 491 aa3.36□□□□□ -1.87
UPF3YGR072W IMD4P50094 524 aaKnown RBP3.36□□□□□ -1.87
UPF3YGR072W YLR352WQ06479 807 aa3.36□□□□□ -1.87
UPF3YGR072W GRS2Q06817 618 aa3.36□□□□□ -1.87
UPF3YGR072W TEN1Q07921 160 aa3.36□□□□□ -1.87
UPF3YGR072W DSE3Q08729 430 aa3.36□□□□□ -1.87
UPF3YGR072W SEC39Q12745 709 aa3.36□□□□□ -1.87
UPF3YGR072W SUI2P20459 304 aaKnown RBP3.35□□□□□ -1.87
UPF3YGR072W RPC53P25441 422 aa3.35□□□□□ -1.87
UPF3YGR072W PAP1P29468 568 aaKnown RBP3.35□□□□□ -1.87
UPF3YGR072W SYN8P31377 255 aa3.35□□□□□ -1.87
UPF3YGR072W YME1P32795 747 aa3.35□□□□□ -1.87
UPF3YGR072W MRE11P32829 692 aa3.35□□□□□ -1.87
UPF3YGR072W YBL055CP34220 418 aaPredicted RBP3.35□□□□□ -1.87
UPF3YGR072W TSC10P38342 320 aa3.35□□□□□ -1.87
UPF3YGR072W RFC1P38630 861 aaKnown RBP3.35□□□□□ -1.87
UPF3YGR072W SGN1P40561 250 aaKnown RBP RIP-Chip data3.35□□□□□ -1.87not detected
UPF3YGR072W HXT14P42833 540 aa3.35□□□□□ -1.87
UPF3YGR072W YJL107CP42947 387 aa3.35□□□□□ -1.87
UPF3YGR072W PET130P47065 347 aa3.35□□□□□ -1.87
UPF3YGR072W OGG1P53397 376 aaPredicted RBP3.35□□□□□ -1.87
UPF3YGR072W SXM1Q04175 944 aaKnown RBP3.35□□□□□ -1.87
UPF3YGR072W RQC1Q05468 723 aaKnown RBP3.35□□□□□ -1.87
UPF3YGR072W PIG1Q06216 648 aa3.35□□□□□ -1.87
UPF3YGR072W ECM30Q06673 1274 aa3.35□□□□□ -1.87
UPF3YGR072W PGA3Q12746 312 aaKnown RBP3.35□□□□□ -1.87
UPF3YGR072W CHO1P08456 276 aa3.34□□□□□ -1.87
UPF3YGR072W GPA1P08539 472 aa3.34□□□□□ -1.87
UPF3YGR072W HOM3P10869 527 aa3.34□□□□□ -1.87
UPF3YGR072W RPB8P20436 146 aa3.34□□□□□ -1.87
UPF3YGR072W BUD5P25300 642 aaPredicted RBP3.34□□□□□ -1.87
UPF3YGR072W STE50P25344 346 aa3.34□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms