RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	YGL242C	P53066	181 aa		5.15	□□□□□ -1.59
RRP40	YOL142W	MRPL13	Q02204	264 aa		5.15	□□□□□ -1.59
RRP40	YOL142W	ECM22	Q05958	814 aa	Predicted RBP	5.15	□□□□□ -1.59
RRP40	YOL142W	ATX2	Q12067	313 aa		5.15	□□□□□ -1.59
RRP40	YOL142W	COX17	Q12287	69 aa		5.15	□□□□□ -1.59
RRP40	YOL142W	MTF2	P10849	440 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	SPO16	P17122	198 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	STV1	P37296	890 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	SCO2	P38072	301 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	ASG1	P40467	964 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	YPT11	P48559	417 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	CSL4	P53859	292 aa	Predicted RBP	5.14	□□□□□ -1.59
RRP40	YOL142W	YNL144C	P53907	740 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	PRP42	Q03776	544 aa	Known RBP	5.14	□□□□□ -1.59
RRP40	YOL142W	PIG1	Q06216	648 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	MCH4	Q08268	501 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	PCD1	Q12524	340 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	NCB2	Q92317	146 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	MYO1	P08964	1928 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	TOM1	Q03280	3268 aa		5.14	□□□□□ -1.59
RRP40	YOL142W	SNF3	P10870	884 aa		5.13	□□□□□ -1.59
RRP40	YOL142W	UBC1	P21734	215 aa	Known RBP	5.13	□□□□□ -1.59
RRP40	YOL142W	YCR006C	P25350	157 aa		5.13	□□□□□ -1.59
RRP40	YOL142W	IFA38	P38286	347 aa		5.13	□□□□□ -1.59
RRP40	YOL142W	VPS41	P38959	992 aa		5.13	□□□□□ -1.59
RRP40	YOL142W	MLC1	P53141	149 aa		5.13	□□□□□ -1.59
RRP40	YOL142W	EAF7	P53911	425 aa	Known RBP	5.13	□□□□□ -1.59
RRP40	YOL142W	SWA2	Q06677	668 aa		5.13	□□□□□ -1.59
RRP40	YOL142W	RRG1	Q12167	365 aa	Predicted RBP	5.13	□□□□□ -1.59
RRP40	YOL142W	PDR18	P53756	1333 aa		5.13	□□□□□ -1.59
RRP40	YOL142W	MRP2	P10663	115 aa	Predicted RBP	5.12	□□□□□ -1.59
RRP40	YOL142W	GND1	P38720	489 aa	Known RBP	5.12	□□□□□ -1.59
RRP40	YOL142W	YFH7	P43591	353 aa		5.12	□□□□□ -1.59
RRP40	YOL142W	MDV1	P47025	714 aa		5.12	□□□□□ -1.59
RRP40	YOL142W	VPS4	P52917	437 aa		5.12	□□□□□ -1.59
RRP40	YOL142W	COG1	P53079	417 aa		5.12	□□□□□ -1.59
RRP40	YOL142W	DCP2	P53550	970 aa	Known RBP	5.12	□□□□□ -1.59
RRP40	YOL142W	INM2	Q05533	292 aa		5.12	□□□□□ -1.59
RRP40	YOL142W	NKP2	Q06162	153 aa		5.12	□□□□□ -1.59
RRP40	YOL142W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	5.12	□□□□□ -1.59	not detected
RRP40	YOL142W	TPK1	P06244	397 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	GPA1	P08539	472 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	TY2A-LR1	P0C2J4	438 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	TY2A-F	P0CX61	438 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	TY2A-GR2	P0CX62	438 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	TY2A-C	P25383	438 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	PTH2	P34222	208 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	ADE17	P38009	592 aa	Known RBP	5.11	□□□□□ -1.59
RRP40	YOL142W	YIR016W	P40572	265 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	LYS20	P48570	428 aa	Known RBP	5.11	□□□□□ -1.59
RRP40	YOL142W	PIB2	P53191	635 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	YGR117C	P53270	476 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	TRM44	Q02648	567 aa	Known RBP	5.11	□□□□□ -1.59
RRP40	YOL142W	TY2A-DR2	Q03483	438 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	TFC6	Q06339	672 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	TY2A-B	Q12260	438 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	TY2A-OR2	Q12293	438 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	RRI2	Q12348	645 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	TY2A-DR1	Q12392	438 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	TY2A-OR1	Q12439	438 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	TY2A-DR3	Q99303	438 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	RAD50	P12753	1312 aa		5.11	□□□□□ -1.59
RRP40	YOL142W	YER145C-A	A0A023PYF4	145 aa		5.1	□□□□□ -1.59
RRP40	YOL142W	SRP54	P20424	541 aa	Known RBP	5.1	□□□□□ -1.59
RRP40	YOL142W	PTK1	P36002	662 aa	Predicted RBP	5.1	□□□□□ -1.59
RRP40	YOL142W	UBP13	P38187	747 aa		5.1	□□□□□ -1.59
RRP40	YOL142W	RFC1	P38630	861 aa	Known RBP	5.1	□□□□□ -1.59
RRP40	YOL142W	SMK1	P41808	388 aa		5.1	□□□□□ -1.59
RRP40	YOL142W	UBP8	P50102	471 aa		5.1	□□□□□ -1.59
RRP40	YOL142W	ASE1	P50275	885 aa		5.1	□□□□□ -1.59
RRP40	YOL142W	YGL036W	P53185	909 aa	Predicted RBP	5.1	□□□□□ -1.59
RRP40	YOL142W	ECM16	Q04217	1267 aa	Known RBP	5.1	□□□□□ -1.59
RRP40	YOL142W	YLR455W	Q06188	304 aa		5.1	□□□□□ -1.59
RRP40	YOL142W	CRN1	Q06440	651 aa		5.1	□□□□□ -1.59
RRP40	YOL142W	CSR1	Q06705	408 aa	Known RBP	5.1	□□□□□ -1.59
RRP40	YOL142W	TMA16	Q08687	178 aa		5.1	□□□□□ -1.59
RRP40	YOL142W	FRE3	Q08905	711 aa		5.1	□□□□□ -1.59
RRP40	YOL142W	CYB2	P00175	591 aa		5.09	□□□□□ -1.59
RRP40	YOL142W	HPR1	P17629	752 aa	Known RBP	5.09	□□□□□ -1.59
RRP40	YOL142W	ATO2	P32907	282 aa		5.09	□□□□□ -1.59
RRP40	YOL142W	PXL1	P36166	706 aa		5.09	□□□□□ -1.59
RRP40	YOL142W	IES5	P40060	125 aa		5.09	□□□□□ -1.59
RRP40	YOL142W	YMR147W	P40218	223 aa	Known RBP	5.09	□□□□□ -1.59
RRP40	YOL142W	SAP185	P40856	1058 aa		5.09	□□□□□ -1.59
RRP40	YOL142W	UBX3	Q12229	455 aa		5.09	□□□□□ -1.59
RRP40	YOL142W	FKS1	P38631	1876 aa	Known RBP	5.09	□□□□□ -1.6
RRP40	YOL142W	ECM29	P38737	1868 aa		5.09	□□□□□ -1.6
RRP40	YOL142W	RAD16	P31244	790 aa		5.08	□□□□□ -1.6
RRP40	YOL142W	XRS2	P33301	854 aa		5.08	□□□□□ -1.6
RRP40	YOL142W	OSH3	P38713	996 aa	Known RBP	5.08	□□□□□ -1.6
RRP40	YOL142W	VPS25	P47142	202 aa		5.08	□□□□□ -1.6
RRP40	YOL142W	CTF18	P49956	741 aa		5.08	□□□□□ -1.6
RRP40	YOL142W	RRT6	P53117	311 aa	Predicted RBP	5.08	□□□□□ -1.6
RRP40	YOL142W	SWF1	Q04629	336 aa		5.08	□□□□□ -1.6
RRP40	YOL142W	GSH2	Q08220	491 aa		5.08	□□□□□ -1.6
RRP40	YOL142W	YLR049C	Q12110	428 aa		5.08	□□□□□ -1.6
RRP40	YOL142W	NTR2	P36118	322 aa	Predicted RBP	5.07	□□□□□ -1.6
RRP40	YOL142W	PSP1	P50896	841 aa	Known RBP	5.07	□□□□□ -1.6
RRP40	YOL142W	BOP3	P53958	396 aa		5.07	□□□□□ -1.6
RRP40	YOL142W	ATG16	Q03818	150 aa		5.07	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 20.2 ms