RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 NPY5RQ15761 445 aa13.62□□□□□ -0.23
PTPRN-204ENST00000423636 FNBP4Q8N3X1 1017 aaPredicted RBP13.62□□□□□ -0.23
PTPRN-204ENST00000423636 HPS3Q969F9 1004 aa13.62□□□□□ -0.23
PTPRN-204ENST00000423636 BRIP1Q9BX63 1249 aa13.62□□□□□ -0.23
PTPRN-204ENST00000423636 WDR19Q8NEZ3 1342 aa13.62□□□□□ -0.23
PTPRN-204ENST00000423636 CNTNAP5Q8WYK1 1306 aa13.62□□□□□ -0.23
PTPRN-204ENST00000423636 PPP6R2O75170 966 aa13.62□□□□□ -0.23
PTPRN-204ENST00000423636 RILPL1Q5EBL4 403 aa13.62□□□□□ -0.23
PTPRN-204ENST00000423636 PROM2Q8N271 834 aa13.62□□□□□ -0.23
PTPRN-204ENST00000423636 TMTC2Q8N394 836 aa13.62□□□□□ -0.23
PTPRN-204ENST00000423636 NOL10Q9BSC4 688 aaKnown RBP13.62□□□□□ -0.23
PTPRN-204ENST00000423636 TMEM60Q9H2L4 133 aa13.62□□□□□ -0.23
PTPRN-204ENST00000423636 GGA1Q9UJY5 639 aa13.62□□□□□ -0.23
PTPRN-204ENST00000423636 C4AP0C0L4 1744 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 C4BP0C0L5 1744 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 SCG2P13521 617 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 CBX1P83916 185 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 SYT10Q6XYQ8 523 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 KIAA0825Q8IV33 1275 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 COA7Q96BR5 231 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 TMEM47Q9BQJ4 181 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 PHF20Q9BVI0 1012 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 TMEM260Q9NX78 707 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 SFPQP23246 707 aaKnown RBP eCLIP13.61□□□□□ -0.23
PTPRN-204ENST00000423636 DPYDQ12882 1025 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 MTF1Q14872 753 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 LETM2Q2VYF4 491 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 C12orf60Q5U649 245 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 MYRIPQ8NFW9 859 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 FOXP1Q9H334 677 aaPredicted RBP13.61□□□□□ -0.23
PTPRN-204ENST00000423636 SPTLC3Q9NUV7 552 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 BIN2Q9UBW5 565 aaPredicted RBP13.61□□□□□ -0.23
PTPRN-204ENST00000423636 XBP1P17861 261 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 MYL5Q02045 173 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 CUL4BQ13620 913 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 CEP135Q66GS9 1140 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 ZFPM1Q8IX07 1006 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 RNF26Q9BY78 433 aaPredicted RBP13.61□□□□□ -0.23
PTPRN-204ENST00000423636 EPC1Q9H2F5 836 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 POLD4Q9HCU8 107 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 INTS13Q9NVM9 706 aa13.61□□□□□ -0.23
PTPRN-204ENST00000423636 ZNF804AQ7Z570 1209 aa13.6□□□□□ -0.23
PTPRN-204ENST00000423636 CEP95Q96GE4 821 aa13.6□□□□□ -0.23
PTPRN-204ENST00000423636 EYA3Q99504 573 aa13.6□□□□□ -0.23
PTPRN-204ENST00000423636 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.6□□□□□ -0.23
PTPRN-204ENST00000423636 GDAQ9Y2T3 454 aa13.6□□□□□ -0.23
PTPRN-204ENST00000423636 USP17L5A8MUK1 530 aa13.6□□□□□ -0.23
PTPRN-204ENST00000423636 PTPN14Q15678 1187 aa13.6□□□□□ -0.23
PTPRN-204ENST00000423636 MRFAP1L1Q96HT8 127 aa13.6□□□□□ -0.23
PTPRN-204ENST00000423636 ZFP91Q96JP5 570 aaPredicted RBP13.6□□□□□ -0.23
PTPRN-204ENST00000423636 IRX2Q9BZI1 471 aaPredicted RBP13.6□□□□□ -0.23
PTPRN-204ENST00000423636 LTBP4Q8N2S1 1624 aa13.6□□□□□ -0.23
PTPRN-204ENST00000423636 WWC2Q6AWC2 1192 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 TBC1D16Q8TBP0 767 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 PDGFDQ9GZP0 370 aaPredicted RBP13.59□□□□□ -0.23
PTPRN-204ENST00000423636 CTNND2Q9UQB3 1225 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 XDHP47989 1333 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 RTL9Q8NET4 1388 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 CACNA1SQ13698 1873 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 AHDC1Q5TGY3 1603 aaPredicted RBP13.59□□□□□ -0.23
PTPRN-204ENST00000423636 TRIM49BA6NDI0 452 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 KLRF2D3W0D1 207 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 PRPF3O43395 683 aaKnown RBP13.59□□□□□ -0.23
PTPRN-204ENST00000423636 ACTN4O43707 911 aaKnown RBP13.59□□□□□ -0.23
PTPRN-204ENST00000423636 CDK8P49336 464 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 ST5P78524 1137 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 E4F1Q66K89 784 aaPredicted RBP13.59□□□□□ -0.23
PTPRN-204ENST00000423636 VPS16Q9H269 839 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 ZSWIM4Q9H7M6 989 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 CHD4Q14839 1912 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 MDM2Q00987 491 aaPredicted RBP13.59□□□□□ -0.23
PTPRN-204ENST00000423636 TTBK2Q6IQ55 1244 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 ZSCAN29Q8IWY8 852 aaPredicted RBP13.59□□□□□ -0.23
PTPRN-204ENST00000423636 PIGSQ96S52 555 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 DDX4Q9NQI0 724 aaKnown RBP13.59□□□□□ -0.23
PTPRN-204ENST00000423636 ATP8A2Q9NTI2 1148 aa13.59□□□□□ -0.23
PTPRN-204ENST00000423636 SRPRBQ9Y5M8 271 aaKnown RBP13.59□□□□□ -0.23
PTPRN-204ENST00000423636 TOP1P11387 765 aaKnown RBP13.58□□□□□ -0.24
PTPRN-204ENST00000423636 RASA1P20936 1047 aa13.58□□□□□ -0.24
PTPRN-204ENST00000423636 NFIAQ12857 509 aa13.58□□□□□ -0.24
PTPRN-204ENST00000423636 PAGE5Q96GU1 130 aa13.58□□□□□ -0.24
PTPRN-204ENST00000423636 ANAPC4Q9UJX5 808 aa13.58□□□□□ -0.24
PTPRN-204ENST00000423636 TTF2Q9UNY4 1162 aaKnown RBP13.58□□□□□ -0.24
PTPRN-204ENST00000423636 MYH15Q9Y2K3 1946 aa13.58□□□□□ -0.24
PTPRN-204ENST00000423636 BAG3O95817 575 aa13.58□□□□□ -0.24
PTPRN-204ENST00000423636 TFRCP02786 760 aaKnown RBP13.58□□□□□ -0.24
PTPRN-204ENST00000423636 CHRNA5P30532 468 aa13.58□□□□□ -0.24
PTPRN-204ENST00000423636 TPM4P67936 248 aa13.58□□□□□ -0.24
PTPRN-204ENST00000423636 DPP8Q6V1X1 898 aaPredicted RBP13.58□□□□□ -0.24
PTPRN-204ENST00000423636 KCTD1Q719H9 257 aa13.58□□□□□ -0.24
PTPRN-204ENST00000423636 MTRQ99707 1265 aa13.58□□□□□ -0.24
PTPRN-204ENST00000423636 BRMS1Q9HCU9 246 aa13.58□□□□□ -0.24
PTPRN-204ENST00000423636 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.58□□□□□ -0.24
PTPRN-204ENST00000423636 CCDC194A0A1B0GVG4 234 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 APBA3O96018 575 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 RBM6P78332 1123 aaKnown RBP13.57□□□□□ -0.24
PTPRN-204ENST00000423636 TXNRD1Q16881 649 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 RC3H1Q5TC82 1133 aaKnown RBP13.57□□□□□ -0.24
PTPRN-204ENST00000423636 RRAGBQ5VZM2 374 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 CERS5Q8N5B7 392 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms