RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 NISCHQ9Y2I1 1504 aa24.77■■□□□ 1.56
PTPRN-204ENST00000423636 SHROOM4Q9ULL8 1493 aa21.91■■□□□ 1.1
PTPRN-204ENST00000423636 DCAF8L2P0C7V8 631 aa21.74■■□□□ 1.07
PTPRN-204ENST00000423636 SUPT5HO00267 1087 aaKnown RBP21.37■■□□□ 1.01
PTPRN-204ENST00000423636 ZCCHC6Q5VYS8 1495 aaKnown RBP20.81■□□□□ 0.92
PTPRN-204ENST00000423636 CCDC180Q9P1Z9 1646 aa20.73■□□□□ 0.91
PTPRN-204ENST00000423636 ABCC9O60706 1549 aa20.34■□□□□ 0.85
PTPRN-204ENST00000423636 CHIC1Q5VXU3 224 aa20.24■□□□□ 0.83
PTPRN-204ENST00000423636 EHMT2Q96KQ7 1210 aa20.14■□□□□ 0.81
PTPRN-204ENST00000423636 MYO15BQ96JP2 1530 aa20.11■□□□□ 0.81
PTPRN-204ENST00000423636 SCRIBQ14160 1630 aa20.11■□□□□ 0.81
PTPRN-204ENST00000423636 LOC105371045A0A1W2PR82 267 aa20.03■□□□□ 0.8
PTPRN-204ENST00000423636 FAM9AQ8IZU1 332 aaPredicted RBP19.92■□□□□ 0.78
PTPRN-204ENST00000423636 DCAF1Q9Y4B6 1507 aa19.86■□□□□ 0.77
PTPRN-204ENST00000423636 PCGF6Q9BYE7 350 aa19.73■□□□□ 0.75
PTPRN-204ENST00000423636 CECR2Q9BXF3 1484 aa19.7■□□□□ 0.74
PTPRN-204ENST00000423636 PABPN1Q86U42 306 aaKnown RBP eCLIP19.7■□□□□ 0.74
PTPRN-204ENST00000423636 RSF1Q96T23 1441 aaPredicted RBP19.69■□□□□ 0.74
PTPRN-204ENST00000423636 TRIM41Q8WV44 630 aa19.62■□□□□ 0.73
PTPRN-204ENST00000423636 RB1CC1Q8TDY2 1594 aa19.5■□□□□ 0.71
PTPRN-204ENST00000423636 PPARGC1BQ86YN6 1023 aaKnown RBP19.48■□□□□ 0.71
PTPRN-204ENST00000423636 MROH2BQ7Z745 1585 aa19.46■□□□□ 0.71
PTPRN-204ENST00000423636 NACADO15069 1562 aa19.4■□□□□ 0.7
PTPRN-204ENST00000423636 WIZO95785 1651 aa19.35■□□□□ 0.69
PTPRN-204ENST00000423636 TTBK1Q5TCY1 1321 aaPredicted RBP19.32■□□□□ 0.68
PTPRN-204ENST00000423636 HRCP23327 699 aa19.15■□□□□ 0.66
PTPRN-204ENST00000423636 RANGAP1P46060 587 aaPredicted RBP19.06■□□□□ 0.64
PTPRN-204ENST00000423636 ABCC8Q09428 1581 aa19.01■□□□□ 0.63
PTPRN-204ENST00000423636 UNC13AQ9UPW8 1703 aa19■□□□□ 0.63
PTPRN-204ENST00000423636 TRIM26Q12899 539 aaPredicted RBP18.97■□□□□ 0.63
PTPRN-204ENST00000423636 BAZ1AQ9NRL2 1556 aaPredicted RBP18.96■□□□□ 0.63
PTPRN-204ENST00000423636 CCDC88BA6NC98 1476 aa18.94■□□□□ 0.62
PTPRN-204ENST00000423636 SMARCA4P51532 1647 aa18.88■□□□□ 0.61
PTPRN-204ENST00000423636 UBTFP17480 764 aaKnown RBP18.86■□□□□ 0.61
PTPRN-204ENST00000423636 BICRAQ9NZM4 1560 aa18.82■□□□□ 0.6
PTPRN-204ENST00000423636 SOGA1O94964 1423 aa18.82■□□□□ 0.6
PTPRN-204ENST00000423636 RUSC2Q8N2Y8 1516 aa18.79■□□□□ 0.6
PTPRN-204ENST00000423636 TOP2AP11388 1531 aaKnown RBP18.75■□□□□ 0.59
PTPRN-204ENST00000423636 SMARCA2P51531 1590 aa18.74■□□□□ 0.59
PTPRN-204ENST00000423636 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.71■□□□□ 0.59
PTPRN-204ENST00000423636 CSRNP3Q8WYN3 585 aa18.64■□□□□ 0.57
PTPRN-204ENST00000423636 BAZ1BQ9UIG0 1483 aaKnown RBP18.57■□□□□ 0.56
PTPRN-204ENST00000423636 ATAD2BQ9ULI0 1458 aa18.57■□□□□ 0.56
PTPRN-204ENST00000423636 EIF4G1Q04637 1599 aaKnown RBP18.57■□□□□ 0.56
PTPRN-204ENST00000423636 WRNQ14191 1432 aaPredicted RBP eCLIP18.53■□□□□ 0.56
PTPRN-204ENST00000423636 CCER1Q8TC90 406 aaPredicted RBP18.5■□□□□ 0.55
PTPRN-204ENST00000423636 CEP162Q5TB80 1403 aa18.47■□□□□ 0.55
PTPRN-204ENST00000423636 HNRNPUL2Q1KMD3 747 aaKnown RBP18.44■□□□□ 0.54
PTPRN-204ENST00000423636 SYNJ1O43426 1573 aa18.4■□□□□ 0.54
PTPRN-204ENST00000423636 DNAJC5BQ9UF47 199 aa18.3■□□□□ 0.52
PTPRN-204ENST00000423636 TNIKQ9UKE5 1360 aa18.28■□□□□ 0.52
PTPRN-204ENST00000423636 RAPGEF2Q9Y4G8 1499 aa18.27■□□□□ 0.52
PTPRN-204ENST00000423636 APLP2Q06481 763 aa18.24■□□□□ 0.51
PTPRN-204ENST00000423636 GOLGA3Q08378 1498 aa18.22■□□□□ 0.51
PTPRN-204ENST00000423636 PEG3Q9GZU2 1588 aa18.22■□□□□ 0.51
PTPRN-204ENST00000423636 P3H3Q8IVL6 736 aa18.22■□□□□ 0.51
PTPRN-204ENST00000423636 ITGAEP38570 1179 aa18.21■□□□□ 0.51
PTPRN-204ENST00000423636 ATP1B4Q9UN42 357 aaPredicted RBP18.21■□□□□ 0.51
PTPRN-204ENST00000423636 ZEB1P37275 1124 aaPredicted RBP18.19■□□□□ 0.5
PTPRN-204ENST00000423636 CLIP1P30622 1438 aa18.19■□□□□ 0.5
PTPRN-204ENST00000423636 CEP164Q9UPV0 1460 aa18.1■□□□□ 0.49
PTPRN-204ENST00000423636 EEA1Q15075 1411 aa18.1■□□□□ 0.49
PTPRN-204ENST00000423636 KANK4Q5T7N3 995 aaPredicted RBP18.09■□□□□ 0.49
PTPRN-204ENST00000423636 NCAPD3P42695 1498 aa18.09■□□□□ 0.49
PTPRN-204ENST00000423636 CUX1P39880 1505 aa18.06■□□□□ 0.48
PTPRN-204ENST00000423636 NESP48681 1621 aa18.02■□□□□ 0.48
PTPRN-204ENST00000423636 TOP2BQ02880 1626 aa17.97■□□□□ 0.47
PTPRN-204ENST00000423636 CUX2O14529 1486 aa17.97■□□□□ 0.47
PTPRN-204ENST00000423636 CC2D2AQ9P2K1 1620 aa17.97■□□□□ 0.47
PTPRN-204ENST00000423636 CFTRP13569 1480 aa17.95■□□□□ 0.46
PTPRN-204ENST00000423636 CADPSQ9ULU8 1353 aa17.94■□□□□ 0.46
PTPRN-204ENST00000423636 VPS8Q8N3P4 1428 aa17.93■□□□□ 0.46
PTPRN-204ENST00000423636 KIF27Q86VH2 1401 aa17.92■□□□□ 0.46
PTPRN-204ENST00000423636 KIF21BO75037 1637 aa17.91■□□□□ 0.46
PTPRN-204ENST00000423636 ARID3CA6NKF2 412 aa17.91■□□□□ 0.46
PTPRN-204ENST00000423636 HMGXB3Q12766 1538 aa17.91■□□□□ 0.46
PTPRN-204ENST00000423636 YTHDC1Q96MU7 727 aaKnown RBP17.9■□□□□ 0.46
PTPRN-204ENST00000423636 RAD54L2Q9Y4B4 1467 aa17.9■□□□□ 0.46
PTPRN-204ENST00000423636 DIEXFQ68CQ4 756 aaKnown RBP17.89■□□□□ 0.45
PTPRN-204ENST00000423636 ARAP1Q96P48 1450 aa17.87■□□□□ 0.45
PTPRN-204ENST00000423636 IGF1RP08069 1367 aa17.85■□□□□ 0.45
PTPRN-204ENST00000423636 FGD5Q6ZNL6 1462 aa17.84■□□□□ 0.45
PTPRN-204ENST00000423636 PRXQ9BXM0 1461 aa17.83■□□□□ 0.44
PTPRN-204ENST00000423636 TDRD9Q8NDG6 1382 aaKnown RBP17.81■□□□□ 0.44
PTPRN-204ENST00000423636 CARMIL1Q5VZK9 1371 aa17.81■□□□□ 0.44
PTPRN-204ENST00000423636 FAM50AQ14320 339 aaKnown RBP17.8■□□□□ 0.44
PTPRN-204ENST00000423636 FANCD2Q9BXW9 1451 aa17.8■□□□□ 0.44
PTPRN-204ENST00000423636 BIVM-ERCC5R4GMW8 1640 aa17.79■□□□□ 0.44
PTPRN-204ENST00000423636 ARHGAP35Q9NRY4 1499 aa17.72■□□□□ 0.43
PTPRN-204ENST00000423636 SCAF1Q9H7N4 1312 aaKnown RBP17.71■□□□□ 0.43
PTPRN-204ENST00000423636 ZNF316A6NFI3 1004 aaPredicted RBP17.69■□□□□ 0.42
PTPRN-204ENST00000423636 NEUROD1Q13562 356 aa17.68■□□□□ 0.42
PTPRN-204ENST00000423636 FHOD3Q2V2M9 1422 aa17.68■□□□□ 0.42
PTPRN-204ENST00000423636 MIER1Q8N108 512 aa17.64■□□□□ 0.41
PTPRN-204ENST00000423636 POLA1P09884 1462 aaPredicted RBP17.63■□□□□ 0.41
PTPRN-204ENST00000423636 HIRIP3Q9BW71 556 aaPredicted RBP17.61■□□□□ 0.41
PTPRN-204ENST00000423636 ERICH3Q5RHP9 1530 aa17.61■□□□□ 0.41
PTPRN-204ENST00000423636 TOPBP1Q92547 1522 aa17.6■□□□□ 0.41
PTPRN-204ENST00000423636 SIN3AQ96ST3 1273 aa17.58■□□□□ 0.4
PTPRN-204ENST00000423636 FBLN2P98095 1184 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms