RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	GSM1	P42950	618 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	CWC21	Q03375	135 aa	Known RBP	5.62	□□□□□ -1.51
NUP1	YOR098C	RBA50	Q04418	439 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	DBP9	Q06218	594 aa	Known RBP	5.62	□□□□□ -1.51
NUP1	YOR098C	VAM6	Q07468	1049 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	RTC5	Q12108	567 aa	Known RBP	5.62	□□□□□ -1.51
NUP1	YOR098C	CHS5	Q12114	671 aa	Known RBP	5.62	□□□□□ -1.51
NUP1	YOR098C	SPO14	P36126	1683 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	YML002W	P0CF17	737 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	PHO84	P25297	587 aa	Known RBP	5.62	□□□□□ -1.51
NUP1	YOR098C	UBP11	P36026	717 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	YHR054C	P38780	354 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	TED1	P40533	473 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	DOT5	P40553	215 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	SQS1	P53866	767 aa	Known RBP	5.62	□□□□□ -1.51
NUP1	YOR098C	ATG21	Q02887	496 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	NGL2	Q03264	515 aa	Known RBP	5.62	□□□□□ -1.51
NUP1	YOR098C	LUC7	Q07508	261 aa	Predicted RBP	5.62	□□□□□ -1.51
NUP1	YOR098C	YSP2	Q06681	1438 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	YLR358C	O13565	187 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	VPS45	P38932	577 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	JHD1	P40034	492 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	YIL108W	P40483	696 aa	Known RBP	5.61	□□□□□ -1.51
NUP1	YOR098C	YJL171C	P46992	396 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	RAI1	P53063	387 aa	Known RBP	5.61	□□□□□ -1.51
NUP1	YOR098C	LCL3	P53153	274 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	LSC2	P53312	427 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	TY1A-DR2	Q03964	440 aa	Known RBP	5.61	□□□□□ -1.51
NUP1	YOR098C	DOT1	Q04089	582 aa	Known RBP	5.61	□□□□□ -1.51
NUP1	YOR098C	ADY4	Q05955	493 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	NOP6	Q07623	225 aa	Known RBP	5.61	□□□□□ -1.51
NUP1	YOR098C	AFT1	P22149	690 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	PRE8	P23639	250 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	GRR1	P24814	1151 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	SRP101	P32916	621 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	ASH1	P34233	588 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	NNK1	P36003	928 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	DAD2	P36162	133 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	REG2	P38232	338 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	RPN14	P53196	417 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	YGR266W	P53326	701 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	UPC2	Q12151	913 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	DRS2	P39524	1355 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	RTC1	Q08281	1341 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	RPS7A	P26786	190 aa	Known RBP	5.61	□□□□□ -1.51
NUP1	YOR098C	POL12	P38121	705 aa	Predicted RBP	5.61	□□□□□ -1.51
NUP1	YOR098C	YSW1	P38280	609 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.61	□□□□□ -1.51	not detected
NUP1	YOR098C	ARB1	P40024	610 aa	Known RBP	5.61	□□□□□ -1.51
NUP1	YOR098C	AAD10	P47182	288 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	NUP84	P52891	726 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	VPS4	P52917	437 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	GPR1	Q12361	961 aa		5.61	□□□□□ -1.51
NUP1	YOR098C	SNF2	P22082	1703 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	DAP2	P18962	818 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	CTM1	P38818	585 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	FKH1	P40466	484 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	LYS4	P49367	693 aa	Predicted RBP	5.6	□□□□□ -1.51
NUP1	YOR098C	KEL2	P50090	882 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	MDR1	P53258	950 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	PDR16	P53860	351 aa	Known RBP	5.6	□□□□□ -1.51
NUP1	YOR098C	THI22	Q06490	572 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	RAV1	P47104	1357 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	CTT1	P06115	562 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	5.6	□□□□□ -1.51	not detected
NUP1	YOR098C	ZAP1	P47043	880 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	TAH11	P47112	604 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	TAM41	P53230	385 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	INN1	P53901	409 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	MGR3	Q04472	501 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	LSP1	Q12230	341 aa	Known RBP	5.6	□□□□□ -1.51
NUP1	YOR098C	SPE4	Q12455	300 aa		5.6	□□□□□ -1.51
NUP1	YOR098C	MLP1	Q02455	1875 aa	Known RBP	5.6	□□□□□ -1.51
NUP1	YOR098C	HMG2	P12684	1045 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	HOM2	P13663	365 aa	Known RBP	5.59	□□□□□ -1.51
NUP1	YOR098C	FRS1	P15624	595 aa	Known RBP	5.59	□□□□□ -1.51
NUP1	YOR098C	SSY5	P47002	699 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	RRP46	P53256	223 aa	Predicted RBP	5.59	□□□□□ -1.51
NUP1	YOR098C	DAK1	P54838	584 aa	Known RBP	5.59	□□□□□ -1.51
NUP1	YOR098C	TRS31	Q03337	283 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	TPP1	Q03796	238 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	HER1	Q12276	1246 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	CTF3	Q12748	733 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	VCX1	Q99385	411 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	SPE2	P21182	396 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	PET127	P32606	800 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	HST3	P53687	447 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	TMA16	Q08687	178 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	YOR223W	Q12015	292 aa		5.59	□□□□□ -1.51
NUP1	YOR098C	ATP2	P00830	511 aa	Known RBP	5.59	□□□□□ -1.52
NUP1	YOR098C	KTR3	P38130	404 aa	Predicted RBP	5.59	□□□□□ -1.52
NUP1	YOR098C	CST26	P38226	397 aa		5.59	□□□□□ -1.52
NUP1	YOR098C	VID24	P38263	362 aa		5.59	□□□□□ -1.52
NUP1	YOR098C	ALT2	P52892	507 aa		5.59	□□□□□ -1.52
NUP1	YOR098C	NAM8	Q00539	523 aa	Known RBP	5.59	□□□□□ -1.52
NUP1	YOR098C	VPS36	Q06696	566 aa		5.59	□□□□□ -1.52
NUP1	YOR098C	PET122	P10355	254 aa		5.58	□□□□□ -1.52
NUP1	YOR098C	PAP1	P29468	568 aa	Known RBP	5.58	□□□□□ -1.52
NUP1	YOR098C	CDS1	P38221	457 aa		5.58	□□□□□ -1.52
NUP1	YOR098C	MET12	P46151	657 aa		5.58	□□□□□ -1.52

Retrieved 100 of 5,963 RNA–protein pairs in 19.5 ms